MXO52659.5prime Sequence
884 bp (810 high quality bases) assembled on 2007-04-02
> MXO52659.5prime
CAGTCGACATGGCTGGCAAGCGACAAGCCACTTCGAACCTGAACCACGAA
AACTGGGACCTGGAGGAGGAACCCGAGGAGCGCGGCACATTCCGCACGGC
CACCGAAGAGGAGCTAAAGACACGCGTTATCAAGAAGGCGCGCCGCAAGA
TTGCCGGTGGATCGTCCGCCGCTGAAGAGGATGGCGCCGAAGAAAAGACT
GCAGAGCCCAAAAGTGTGTTCAGTGGCTTTTCCGGTTTCGGCAAGCCGGC
TGCGAGCCCAGCCGCGGGTTCGCCTTTCTCCTTCCTGGCCAATGTGACGG
CACCAGCCACGACCTCTAGCAGCGAGCCAAAAAAGTCTGCATTCTCGTTC
GGGTTCAGCTCCAGTTCCAGTTCGGCCGATCGGCCTGCCAGCACTAGCAT
TTGCGGCACCGCCAGCACCAGCAGCACGGCCCCCTCTCCTTTGCCGGCCA
AGGAATCAACAAGTACCGTCGATGGCGCCAAGCCGACCACCTCGATATTT
GGCAACATATCAGCTGCCAAGAAGGAGAGTAGCGAGGCCAAAACCAGCAG
CAGCAGCACTAGCCTCACATCCACCATGGAGACCTCCGAGTACCGTGAAA
GCGTTGCTGACCTAAATCGGTCCGTCATAAAATTCCTGCAGGACCAAATG
GGCAAAAGTCCCTACTGCATACTGACTCCAGTGTTTAAGAACTATGATGA
GCATCTAAAGGATCTGCAAGACGAGGAGAGCGCCAGAACGAACTCCACGA
AATCCAAAACGGCACAAGCTCGTTCTCAAGAACCAGTTGCAAAGGTGTCC
CGTGCATCGTCGCCACCAAAAGCGGCTACTACGTTTACGTTTGGCAAGCC
CAGCGCGCCAATAGGCGCCAGCGTATCGCCCTTA
MXO52659.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2158-PA | 1695 | CG2158-RA | 1..876 | 9..884 | 4355 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup50-RA | 1907 | CG2158-RA | 103..978 | 9..884 | 4365 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8123419..8124069 | 234..884 | 3240 | 99.8 | Plus |
| 2R | 25286936 | 2R | 8123138..8123365 | 9..236 | 1140 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:40:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6880 | 502..577 | 110 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2375 | 509..577 | 108 | 63.8 | Plus |
MXO52659.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:45 Download gff for
MXO52659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2158-PA | 1..875 | 9..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:10 Download gff for
MXO52659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup50-RA | 103..977 | 9..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:34 Download gff for
MXO52659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup50-RA | 103..977 | 9..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:34 Download gff for
MXO52659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8123138..8123363 | 9..234 | 100 | -> | Plus |
| 2R | 8123420..8124068 | 235..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:10 Download gff for
MXO52659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4010643..4010868 | 9..234 | 100 | -> | Plus |
| arm_2R | 4010925..4011573 | 235..883 | 99 | | Plus |
