MXO52661.5prime Sequence
753 bp (626 high quality bases) assembled on 2007-04-02
> MXO52661.5prime
CAGTCGACATGTCGCTCAAGCCCAAAATAGTGGAGTTTGTCGATGTTTGG
CCGCGCCTGCGCTGCATCGCCGAGTCGGTGATAACGCTCACCAAAGTGGA
GCGCTCGGTGTGGAATACTAGCTTCAGCGACGTTTACACACTGTGCGTGG
CGCAGCCGGAACCGATGGCTGATCGTCTTTATGGCGAAACAAAACACTTT
CTTGAGCAGCACGTCCAGGAGATGCTGGCCAAAAAGGTGCTGATCGAGGG
AGAATGCTCCCATTCCAATGGTGGCCCAGACCTTCTCCAGCGTTACTACA
TCACCTGGATGGAATATAGCCAGGGTATCAAGTATCTGCACCAATTGTAC
ATCTACCTGAATCAACAACACATCAAGAAACAAAAGATTACCGATACGGA
ATCGTTCTACGGTAATCTGTCAAGCGATGCTGCGGAGCAGATGGAGATTG
GCGAGCTAGGTCTAGACATTTGGCGCCTGTATATGATTGAGTACTTGTCC
AGCGAACTGGTCCGTCACATACTCGAGGGCATTGCCGCAGACAGAGCTAG
CAATGGCACCTTGGATCACCATCGCGTGCAAATTATCAACGGAGTGATAC
ACAGCTTCGTGGAGGTACAGGACTATAAGAAAACAGGCTCGCTTAAGCTC
TACCAGGAACTCTTTGAAGGCCCCATGCTGGAGGCCAGTGGCGCCTACTA
CACAGACGAGGCTAACAAGTTGCTCCATCGGTGCTCAGTGTCGGAGTACA
TGC
MXO52661.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1512-PA | 2262 | cul-2-RA | 1..745 | 9..753 | 3725 | 100 | Plus |
| CG1512-PB | 2262 | cul-2-RB | 1..745 | 9..753 | 3725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul2-RB | 2831 | CG1512-RB | 177..924 | 6..753 | 3740 | 100 | Plus |
| Cul2-RA | 3426 | CG1512-RA | 284..1031 | 6..753 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21660123..21660523 | 353..753 | 2005 | 100 | Plus |
| 2L | 23513712 | 2L | 21659838..21660064 | 126..352 | 1135 | 100 | Plus |
| 2L | 23513712 | 2L | 21659151..21659272 | 6..127 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:22 has no hits.
MXO52661.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:45 Download gff for
MXO52661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1512-PB | 1..745 | 9..753 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:07 Download gff for
MXO52661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul-2-RA | 279..1031 | 1..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:33 Download gff for
MXO52661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul2-RA | 279..1031 | 1..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:33 Download gff for
MXO52661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21659146..21659272 | 1..127 | 98 | -> | Plus |
| 2L | 21659840..21660064 | 128..352 | 100 | -> | Plus |
| 2L | 21660123..21660523 | 353..753 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:07 Download gff for
MXO52661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21660123..21660523 | 353..753 | 100 | | Plus |
| arm_2L | 21659146..21659272 | 1..127 | 98 | -> | Plus |
| arm_2L | 21659840..21660064 | 128..352 | 100 | -> | Plus |
