MXO52663.5prime Sequence
835 bp (666 high quality bases) assembled on 2007-04-02
> MXO52663.5prime
CAGTCGACATGTCTGGAAATCCTTTCGACAGCGACGAAGATCAAAGCTCG
GCCAGTGGAGAGATACTAGAGGGCTTCCTATGTCCCATTTGCCGTGCGGA
TCTCAAGTCCATCGATGTGCTCACGGATCATTTTGCCCGCCAGCATGCGG
AAGAGGAGGATGCCCTAAAATCCTTTAAAGATATCTTTACCAAGGCGAAA
AAGAAGATCCTAAACCCCTTTGAGGATGAAAAAGGTGCATCTGTATCGTC
GCCCGCAGGTTCCTCCTCTTCAGCGGCTGGCAAGAATCCCAATGGCAACG
GAGATCGCAATGGACCCAGTAATGCCCGCTCCCGTCTAAATGTATTTAAC
TATATGGCCAGGCAGCAGCCTGGTGCTGAGTGCTCCCACTTCGAGTACTT
TCAGTCCATTCGCAATCCTCGCCTGGAGCGATATGCCAGCGAAACAAACA
AACTAATCATTCGTTTGCACCGCCTGCTTAAGGATCTGCCAGCGGATTCA
GTGCAGCGGCGTCAGCATGAACAGCAAACAGTTGCCTGGCTGGATGGTAG
TTCCGTCGAGTTGTGTCCCAGTTGTGCCAAGAGTTTCCACATCGCCCGAA
GACAACACCACTGCCGTTTGTGCGGAGGCATAATGTGCAATGATTGCTCC
AAGTTCCTGCCCCTGGAAGATGCCATGCAACTAGCCAGTCTTTCCACCAC
AAGAAGCGAGCCCCTTCAGCAGCTGCATCAGCATGAGAACGCCATCCGGC
TGTGCGAACACTGCCTTTGGCTGCTGGACACCCGAAAGGATATGCACAAC
AGTCTCACTTGTCGGCCACTCCTCGTCCAGGTCTA
MXO52663.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8506-PA | 1518 | CG8506-RA | 1..827 | 9..835 | 4010 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbsn-5-RA | 1846 | CG8506-RA | 261..1087 | 9..835 | 4060 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8160092..8160758 | 9..675 | 3320 | 99.9 | Plus |
| 2L | 23513712 | 2L | 8160817..8160976 | 676..835 | 740 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:40:33 has no hits.
MXO52663.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:45 Download gff for
MXO52663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8506-PA | 1..826 | 9..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:15 Download gff for
MXO52663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbsn-5-RA | 254..1086 | 1..834 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:38 Download gff for
MXO52663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbsn-5-RA | 254..1086 | 1..834 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:38 Download gff for
MXO52663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8160817..8160975 | 676..834 | 97 | | Plus |
| 2L | 8160085..8160758 | 1..675 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:15 Download gff for
MXO52663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8160085..8160758 | 1..675 | 99 | -> | Plus |
| arm_2L | 8160817..8160975 | 676..834 | 97 | | Plus |
