MXO52665.5prime Sequence
647 bp (645 high quality bases) assembled on 2007-04-02
> MXO52665.5prime
CAGTCGACATGGCCACAAAACCGGGAAAAGGTGACGGCAAGCAGGTGAAG
GGAAAAAGGACCTCCAAGAACAAGACAGATGGCCCCGGCGGTGGTGGCGG
CGATGCCGATGACTTCGATGCCTGGATGAAGTCGCGCCAGCTGCTCAAGC
CCGATGACCAGCTCGATCTCACCGAGGCGGAACTGGGCGAGGAGATCACC
AAGGTGCTGACTCCCACCAACACGAACATCGTTCGCAATCTCGTGGTCTA
TAGCTTCAAGGAAGGCGAGTTTGTTCCGGCTCCGTTGCCCGGCAATACGG
TCACCCTAATCGCCTTTGCCGGCAACTCACTTCACGTGGACTCCGATGAG
GGTCGCCGTCAGATCGAGGAGTCCGACGAGATTGGCTACCCACTGCCCAT
GCCCAACTACACTGTGGTGGAGCAGCGCGAGACGGATAACGTCGACGGTG
AGGAGGGAGAGGGCGAGGAGGATGATGATGGGGCCACCGCAAAGGACGCC
GCCGTAGAAGACGAGGATGTCGAGGAGGAGGACGACGAGGAGGCCAAGGG
CACCGAAGGCGATGAGGGCGAGGGCGAAGGCGAGGGAGAGGGTGCTGCTG
CCCGCCAGGAGGACGATGAGCCCGCCCACCAAGCGGCGGCCGTTTCA
MXO52665.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9313-PA | 2220 | CG9313-RA | 1..639 | 9..647 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9313-RC | 3069 | CG9313-RC | 606..1244 | 9..647 | 3195 | 100 | Plus |
| CG9313-RA | 2649 | CG9313-RA | 186..824 | 9..647 | 3195 | 100 | Plus |
| CG9313-RB | 2652 | CG9313-RB | 186..827 | 9..647 | 3155 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20981311..20981741 | 57..487 | 2155 | 100 | Plus |
| 2R | 25286936 | 2R | 20981801..20981960 | 488..647 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 20979506..20979553 | 9..56 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:40:44 has no hits.
MXO52665.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:46 Download gff for
MXO52665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-PA | 1..638 | 9..646 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:21 Download gff for
MXO52665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 179..823 | 1..646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:43 Download gff for
MXO52665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 179..823 | 1..646 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:43 Download gff for
MXO52665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20981313..20981741 | 59..487 | 100 | -> | Plus |
| 2R | 20981801..20981959 | 488..646 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:21 Download gff for
MXO52665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16868818..16869246 | 59..487 | 100 | -> | Plus |
| arm_2R | 16869306..16869464 | 488..646 | 100 | | Plus |
