MXO52667.5prime Sequence
913 bp (789 high quality bases) assembled on 2007-04-02
> MXO52667.5prime
CAGTCGACATGACACAGCGTTTCGATGACTGCGAACAAGTGATCACCGAT
GGCAGGCGAAACTTCGACAGCGAAATCCTTTCACCGCCCGGCAATGACGA
AATCAAGGAGGATCAATGGATGGGCGTTACGGTGCGTTCGAATCCCCTAC
AGGCCAACGGATCCGGCGGAAAGGTAATCGTCTGCGCCCATCGCTATATG
TACATCGTCCGAGAGAATCGTTATGGACAGGGTCTCTGCTATCTCCTAAC
GAACGATCTGCAATTCGAAGAGGTCCACGAGCCCTGCAAAGGACGACCTG
TGCAAAGGCAACACGAAGATTATGGACTGTGCCAGGCGGGCACATCGGCT
GCCCTACTGGACGATGACACCATGGTGTTGGGTTCCCCTGGACCGTACAC
ATGGCGCGGATCCATTTGGGTGACTCAGGTGGGCGGGGAGTACCTGCAGC
GCGACAAGACGACCTACTACAGTGATCATTCGGACTTGAATTCGCCGGTG
GACAAGTACAGCTATCTTGGTATGTCGGTGACCGGTGGCAGATTCTTTGG
TCACATGTCATATGCNGGCTGGAGCTCCACGATCCGAGGGTCATGGACAG
GTGGTGATTTTCGACAAGTCCACCGATAATCCAATACCGGTGCACTCGAT
CCTGGATGGTGAGCAATTCGGTTCGAGTTTTGGCTATGAACTGGCAACCG
CCGATATAAACGGAGATCACAGGCCGGATTTAATAGTGGCAGCTCCTTTG
TACTTCACAAAAACGGAAGGTGGAGCTGTGTATGTGTACCAGAATATCCA
GGATACGTTGCCCATGAAGTACACACTCAAGTTGACGGGACCTCTGGAGA
GTCGTTTCGGTCTGGCGTTGGCCCATATCGGAGATCTGAACAGGATAACT
GCGAGGATCTGGC
MXO52667.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1771-PA | 3150 | mew-RA | 1..557 | 9..565 | 2785 | 100 | Plus |
| CG1771-PB | 3441 | mew-RB | 292..848 | 9..565 | 2785 | 100 | Plus |
| CG1771-PA | 3150 | mew-RA | 558..883 | 567..892 | 1605 | 99.6 | Plus |
| CG1771-PB | 3441 | mew-RB | 849..1174 | 567..892 | 1605 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mew-RE | 3863 | CG1771-RE | 253..1157 | 9..913 | 4465 | 99.7 | Plus |
| mew-RF | 4254 | CG1771-RF | 644..1548 | 9..913 | 4465 | 99.7 | Plus |
| mew-RB | 5001 | CG1771-RB | 644..1548 | 9..913 | 4465 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13218059..13218666 | 913..306 | 2930 | 99.5 | Minus |
| X | 23542271 | X | 13219747..13219883 | 308..172 | 685 | 100 | Minus |
| X | 23542271 | X | 13220030..13220146 | 177..61 | 585 | 100 | Minus |
| X | 23542271 | X | 13224984..13225035 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:07:45 has no hits.
MXO52667.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:46 Download gff for
MXO52667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1771-PB | 285..1196 | 1..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:08 Download gff for
MXO52667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mew-RB | 637..1548 | 1..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:53 Download gff for
MXO52667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mew-RB | 637..1548 | 1..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:53 Download gff for
MXO52667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13218059..13218664 | 308..913 | 99 | <- | Minus |
| X | 13219748..13219881 | 174..307 | 100 | <- | Minus |
| X | 13220034..13220146 | 61..173 | 100 | <- | Minus |
| X | 13224984..13225040 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:08 Download gff for
MXO52667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13112092..13112697 | 308..913 | 99 | <- | Minus |
| arm_X | 13113781..13113914 | 174..307 | 100 | <- | Minus |
| arm_X | 13114067..13114179 | 61..173 | 100 | <- | Minus |
| arm_X | 13119017..13119073 | 1..60 | 93 | | Minus |
