MXO52668.5prime Sequence
887 bp (810 high quality bases) assembled on 2007-04-02
> MXO52668.5prime
CAGTCGACATGGCCCAGACGGCATACTTGAAGGTGACACGCATCGCGATG
CGCTCCGCTTCGAATCTTTCCAAACGGCGGGTGGAGGAGCTGAACTCCGG
GCTCGGCGAGCTACGGCAGCTGCTGTCTTGCGTGGTCTGCTGCCAGCTGC
TGGTGGATCCCTACTCGCCCAAGGGCAAGCGGTGCCAGCACAACGTGTGC
CGGCTGTGTCTGCGCGGTAAGAAGCATCTGTTTCCCAGCTGCACCCAGTG
CGAGGGTTGCTCCGACTTCAAGACCTACGAGGAGAACCGTATGATGGCCG
CCCAGCTACTGTGCTACAAGACGCTGTGCGTCCACCTGCTCCACTCGGCA
TTATTTGGTGAGCTGGCCGGGATGCGGCCCCAGGTGGCCAGGGAGCTGGT
GCCTCGCATCAAGCTGCCTCCCAAAACCACACAGGAGTTCATTCGCGAGG
GCTCAAACATCTCCGACACTTTTGACATCTTTCTGCCCCAGCCGGATTTG
CCGTTCCTCAAGGACATGCCCACATCGCTGCCCGCAGAGACGCCGCCTAC
GTCGGCGGTCACGACTCCGGAACTGCCCTATGATCACCACCTCAACATCA
GCGACATTGAGGCGGAGGCGGCGGCCACAGCGGAGCAGGGTCACTTCTCG
CCGCTTCCCCTGCTGCCCACAGGATCTCGCATGGGCATGCTCTCTCACGC
CGGGCAAATAGTCATTGCCACCGAGAGCTCGGAGTCGGGCTTCATGGACC
AAGCGTGGACGGATCAGGTAGACCTGTCTGGCACGGTTTCGGTGTCCAAT
ACACAAATAGCGGCAACAACTTTGCTGTCTCCTACGTGATGCCCACTTCT
GCGACCACGAAAGTCGATCCACAGGAACTGCAAATCG
MXO52668.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3241-PB | 2322 | msl-2-RB | 1..791 | 9..799 | 3955 | 100 | Plus |
| CG3241-PA | 2322 | msl-2-RA | 1..791 | 9..799 | 3955 | 100 | Plus |
| CG3241-PB | 2322 | msl-2-RB | 791..880 | 798..887 | 400 | 97.7 | Plus |
| CG3241-PA | 2322 | msl-2-RA | 791..880 | 798..887 | 400 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-2-RA | 3843 | CG3241-RA | 473..1353 | 8..887 | 4350 | 99.7 | Plus |
| msl-2-RB | 3710 | CG3241-RB | 340..1220 | 8..887 | 4350 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3464760..3465640 | 887..8 | 4325 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:18:12 has no hits.
MXO52668.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:47 Download gff for
MXO52668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3241-PA | 1..880 | 9..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:38 Download gff for
MXO52668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-RB | 333..1220 | 1..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:24 Download gff for
MXO52668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-2-RB | 333..1220 | 1..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:24 Download gff for
MXO52668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3464760..3465643 | 1..887 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:38 Download gff for
MXO52668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3464760..3465643 | 1..887 | 99 | | Minus |
