Clone MXO52669 Report

Search the DGRC for MXO52669

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:526
Well:69
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCycE-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO52669.5prime Sequence

928 bp (828 high quality bases) assembled on 2007-04-02

> MXO52669.5prime
CAGTCGACATGGGTTTAAATGCCAAGAGTGTTTGTTCTACCAGCAGCACT
GAGCCAAATGGCAGCATAGTCACAACCGCCCCCAGCAACGGAGAAGTGAG
CAGCAGCATAGTCGTCGTCGTCAGCAGCAGTAGTATCAGTAGCAGCAGCG
ATAGCCCAATCGCTATCCTTCCACATCCAGATCCAATCCCATCAACATCG
TTCTCTTCAGCGTCGCAACGAAGTGAAGAGGAGCTACCAGGAACCTCAGC
AGCCTCCAGAACCGACGAGATGTGCTCTTGTGATAGCCAGAATCTTGCAG
CATCCACAGCCGCGACTTCCAATGGCAATAAACGTAAACGGCGTTTAAGC
AGCGATTCAAACGAGGACCCTGAACTCGGTTTTGAGCCTCCATCAGCTAA
GCGCCAGCAGCGACTGCCCGCTTTGTACGGCAGCGAGCAGGGCAATCTGT
CATCGGTTGCCTCCTCGGTCTACACCTCGCCCGTTGTCTCGGTTGATGGC
CAGAGTACCCAGGAGCTGCTCAGCATACGTAGCTCACCGGCCGAGGATCT
GTCGGAGGCGCCACACAGTCCGCTGCCGGACAGCCCGGACAGTCCGCCGA
GTCCGGATCGTGGAAGCAAGCAGACGCCAGTGGTGGTGCGCTACGCTGCG
GAGCAGGTGGTGACCAGTACGGTGGTCACGCAGAAGACGGAGGATGATGA
CCTTTTGGACGACAGCTGCGAGGACTACTCGTACGACGAGGATGATGAGG
ATGACGTTGAGGAGGAGGACGACGACGTGGAGATCTACTCCTCCACAATT
TCTCCAGCCTCCTCCGGCTGCAGCCAGCAGCAGGCGGTGAATGGAGAGCG
TACTCCCGGCCTGCCAAAACATCAGGAGCAGATCCATCATCCGGTCAGTG
ACCTGATGATTACATGCGGACGCCCATG

MXO52669.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3938-PC 2130 CycE-RC 1..904 9..912 4520 100 Plus
CG3938-PA 2130 CycE-RA 1..904 9..912 4520 100 Plus
CG3938-PE 2130 CycE-RE 1..904 9..912 4520 100 Plus
CG3938-PD 2130 CycE-RD 1..904 9..912 4520 100 Plus
CG3938-PB 1809 CycE-RB 36..583 365..912 2740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
CycE-RD 3946 CG3938-RD 517..1437 9..928 4580 99.9 Plus
CycE-RE 3703 CG3938-RE 274..1194 9..928 4580 99.9 Plus
CycE-RA 3653 CG3938-RA 427..1347 9..928 4580 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15730273..15730838 928..364 2780 99.8 Minus
2L 23513712 2L 15737627..15737966 366..27 1700 100 Minus
Blast to na_te.dros performed 2014-11-28 21:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6717..7016 36..342 200 56.1 Plus

MXO52669.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:47 Download gff for MXO52669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3938-PD 1..921 9..928 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:28 Download gff for MXO52669.5prime
Subject Subject Range Query Range Percent Splice Strand
CycE-RA 427..1347 9..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:48 Download gff for MXO52669.5prime
Subject Subject Range Query Range Percent Splice Strand
CycE-RA 427..1347 9..928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:48 Download gff for MXO52669.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15730273..15730836 366..928 99 <- Minus
2L 15737628..15737964 29..365 100 <- Minus
2L 15740772..15740791 9..28 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:28 Download gff for MXO52669.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15730273..15730836 366..928 99 <- Minus
arm_2L 15737628..15737964 29..365 100 <- Minus
arm_2L 15740772..15740791 9..28 100   Minus