MXO52669.5prime Sequence
928 bp (828 high quality bases) assembled on 2007-04-02
> MXO52669.5prime
CAGTCGACATGGGTTTAAATGCCAAGAGTGTTTGTTCTACCAGCAGCACT
GAGCCAAATGGCAGCATAGTCACAACCGCCCCCAGCAACGGAGAAGTGAG
CAGCAGCATAGTCGTCGTCGTCAGCAGCAGTAGTATCAGTAGCAGCAGCG
ATAGCCCAATCGCTATCCTTCCACATCCAGATCCAATCCCATCAACATCG
TTCTCTTCAGCGTCGCAACGAAGTGAAGAGGAGCTACCAGGAACCTCAGC
AGCCTCCAGAACCGACGAGATGTGCTCTTGTGATAGCCAGAATCTTGCAG
CATCCACAGCCGCGACTTCCAATGGCAATAAACGTAAACGGCGTTTAAGC
AGCGATTCAAACGAGGACCCTGAACTCGGTTTTGAGCCTCCATCAGCTAA
GCGCCAGCAGCGACTGCCCGCTTTGTACGGCAGCGAGCAGGGCAATCTGT
CATCGGTTGCCTCCTCGGTCTACACCTCGCCCGTTGTCTCGGTTGATGGC
CAGAGTACCCAGGAGCTGCTCAGCATACGTAGCTCACCGGCCGAGGATCT
GTCGGAGGCGCCACACAGTCCGCTGCCGGACAGCCCGGACAGTCCGCCGA
GTCCGGATCGTGGAAGCAAGCAGACGCCAGTGGTGGTGCGCTACGCTGCG
GAGCAGGTGGTGACCAGTACGGTGGTCACGCAGAAGACGGAGGATGATGA
CCTTTTGGACGACAGCTGCGAGGACTACTCGTACGACGAGGATGATGAGG
ATGACGTTGAGGAGGAGGACGACGACGTGGAGATCTACTCCTCCACAATT
TCTCCAGCCTCCTCCGGCTGCAGCCAGCAGCAGGCGGTGAATGGAGAGCG
TACTCCCGGCCTGCCAAAACATCAGGAGCAGATCCATCATCCGGTCAGTG
ACCTGATGATTACATGCGGACGCCCATG
MXO52669.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3938-PC | 2130 | CycE-RC | 1..904 | 9..912 | 4520 | 100 | Plus |
CG3938-PA | 2130 | CycE-RA | 1..904 | 9..912 | 4520 | 100 | Plus |
CG3938-PE | 2130 | CycE-RE | 1..904 | 9..912 | 4520 | 100 | Plus |
CG3938-PD | 2130 | CycE-RD | 1..904 | 9..912 | 4520 | 100 | Plus |
CG3938-PB | 1809 | CycE-RB | 36..583 | 365..912 | 2740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycE-RD | 3946 | CG3938-RD | 517..1437 | 9..928 | 4580 | 99.9 | Plus |
CycE-RE | 3703 | CG3938-RE | 274..1194 | 9..928 | 4580 | 99.9 | Plus |
CycE-RA | 3653 | CG3938-RA | 427..1347 | 9..928 | 4580 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15730273..15730838 | 928..364 | 2780 | 99.8 | Minus |
2L | 23513712 | 2L | 15737627..15737966 | 366..27 | 1700 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 21:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..7016 | 36..342 | 200 | 56.1 | Plus |
MXO52669.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:47 Download gff for
MXO52669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3938-PD | 1..921 | 9..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:28 Download gff for
MXO52669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycE-RA | 427..1347 | 9..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:48 Download gff for
MXO52669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycE-RA | 427..1347 | 9..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:48 Download gff for
MXO52669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15730273..15730836 | 366..928 | 99 | <- | Minus |
2L | 15737628..15737964 | 29..365 | 100 | <- | Minus |
2L | 15740772..15740791 | 9..28 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:28 Download gff for
MXO52669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15730273..15730836 | 366..928 | 99 | <- | Minus |
arm_2L | 15737628..15737964 | 29..365 | 100 | <- | Minus |
arm_2L | 15740772..15740791 | 9..28 | 100 | | Minus |