MXO52672.5prime Sequence
641 bp (637 high quality bases) assembled on 2007-04-02
> MXO52672.5prime
CAGTCGACATGGTAAAGAAGCGTCCGGCGGACAGTCGCGACCACGATTGC
TCAACGGATTCCGGCAATGAGGATCTGCATCATCGAAAAGGACTCGGCCC
GCCCGGTCAGTCGGATGGCGCCACCCCCACCACCGCCAGCTGCCAGCACA
TCAAGAAGGCGGTGGACGCGGCCCGACTAAGGCGTCTACTGAAGTCCACG
GGTCTACTCTACGAGTGCAGCCAATGTCAGAAGCTGGGCAAGACAGCGGG
CAGCGCTGCGGGAGCGGGAGCGAGTGAAGGAGCTGTCGGTCCTGGCGGAA
ATCCGGTCACCTTCGAATTTGACAACACCCTGTGGCTGTGCCTCAAGTGC
GGCAGCCAGCTGTGCGGGAGGGCACTTTTCACCCACCCCTTAGAACACTA
CCAGACACCTCATTCGGACTCACATGCCCTGGCCATGAATACGCGCTCCT
TCGACATCTGGTGCTATGAGTGCGACATGAAGATCTGCTCCAATCTGCGC
AAAAACCTGCTTGAGTGCGTGGAGCTGGTCAAGAAATTGGCCCAGAAGCC
GCCCACTAGCACGGTTACGCCCAGTACGCCAACGATTAGCTACATCGAGG
AGAAGCTTAAAGCCGCGCTGGAGCATCTCACACCAATAGTG
MXO52672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4165-PA | 3381 | CG4165-RA | 1..367 | 9..375 | 1785 | 99.4 | Plus |
| CG4165-PD | 3381 | CG4165-RD | 1..367 | 9..375 | 1785 | 99.4 | Plus |
| CG4165-PC | 3381 | CG4165-RC | 1..367 | 9..375 | 1785 | 99.4 | Plus |
| CG4165-PB | 3381 | CG4165-RB | 1..367 | 9..375 | 1785 | 99.4 | Plus |
| CG4165-PA | 3381 | CG4165-RA | 380..633 | 388..641 | 1270 | 100 | Plus |
| CG4165-PD | 3381 | CG4165-RD | 380..633 | 388..641 | 1270 | 100 | Plus |
| CG4165-PC | 3381 | CG4165-RC | 380..633 | 388..641 | 1270 | 100 | Plus |
| CG4165-PB | 3381 | CG4165-RB | 380..633 | 388..641 | 1270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4165-RF | 4454 | CG4165-RF | 201..834 | 8..641 | 3035 | 98.6 | Plus |
| CG4165-RE | 4093 | CG4165-RE | 153..786 | 8..641 | 3035 | 98.6 | Plus |
| CG4165-RB | 4066 | CG4165-RB | 126..759 | 8..641 | 3035 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5422621..5423017 | 8..404 | 1850 | 97.7 | Plus |
| X | 23542271 | X | 5423115..5423355 | 401..641 | 1205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:07:48 has no hits.
MXO52672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:48 Download gff for
MXO52672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4165-PC | 1..633 | 9..641 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:11 Download gff for
MXO52672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4165-RB | 120..759 | 1..641 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:54 Download gff for
MXO52672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4165-RB | 120..759 | 1..641 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:54 Download gff for
MXO52672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5422615..5423017 | 1..404 | 96 | -> | Plus |
| X | 5423119..5423355 | 405..641 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:11 Download gff for
MXO52672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5316648..5317050 | 1..404 | 96 | -> | Plus |
| arm_X | 5317152..5317388 | 405..641 | 100 | | Plus |
