MXO52674.5prime Sequence
809 bp (561 high quality bases) assembled on 2007-04-02
> MXO52674.5prime
CAGTCGACATGACTGTGATAATGGTGGACGGGTTCGCCCTGTGGCTGCTC
TACAAGCTGTTCCTGTCTCCCTGCTGCCTTCTCCTGTGGCACGTGCTTAA
ACTGTCTACCGTCCTCTTTACCTTTGCAGACAATAACGGCGCCCGCAAGC
AAGCGGAGCACCCGAACAATCAGTCGCACCACATCAACCACCACAATCAT
CAGCATCCGACAAGCAATCCCAATGAGCTGCCCAAGCCGAAGAGGGTCCT
CTATCCGCGGGAGAACATACGCATTGGCTGGAAGCAGTCGGAGCGCAAAT
GGCAGGTGGGCACGGGCATGATCAATGTGGGCAACACCTGCTACCTCAAC
TCAACGCTTCAGGCGCTCCTGCACATACCCGCCCTGGCCAATTGGCTCGT
TTCGGAGCAGGCGCATCTGGCTGACTGCAATGTGGCCGAACCTGGCAGCG
GTTGCATCATTTGCGCCATGACCAAAACACTTTTGGCCACCCAAAGCAAT
CAGTCGGCCGTCAGACCCTTCCTCATCTACTCGAAGCTAAAGCAGATCTG
CAAACACATGGTCGNTTGGTCGCCAAGAGGATGCGCACGAGTTCCTGCGC
TTCCTGGTCGAGGCCATGGAGCGGGCGTATTTGATGCGGTTTCGTAACTA
CAAAGAGCTGGATCAGTTGGTTAAGGAGACCACGCCGCTGGGACAGATCT
TTGGCGGCTATCTGCGCAGCGAGGTGCGCTGTCTGAGCTGCAACCATGTG
TCCATTACGTTTCAGCACTTCCAGGATCTGTTGCTCGACATCCGCAAGGC
AGACTCCTT
MXO52674.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5505-PB | 2907 | mule-RB | 1..556 | 9..564 | 2780 | 100 | Plus |
| CG5505-PE | 3048 | mule-RE | 1..556 | 9..564 | 2780 | 100 | Plus |
| CG5505-PC | 2847 | mule-RC | 59..496 | 127..564 | 2190 | 100 | Plus |
| CG5505-PF | 2988 | mule-RF | 59..496 | 127..564 | 2190 | 100 | Plus |
| CG5505-PA | 3258 | mule-RA | 331..766 | 129..564 | 2180 | 100 | Plus |
| CG5505-PD | 3117 | mule-RD | 331..766 | 129..564 | 2180 | 100 | Plus |
| CG5505-PB | 2907 | mule-RB | 557..800 | 566..809 | 1220 | 100 | Plus |
| CG5505-PE | 3048 | mule-RE | 557..800 | 566..809 | 1220 | 100 | Plus |
| CG5505-PC | 2847 | mule-RC | 497..740 | 566..809 | 1220 | 100 | Plus |
| CG5505-PF | 2988 | mule-RF | 497..740 | 566..809 | 1220 | 100 | Plus |
| CG5505-PA | 3258 | mule-RA | 767..1010 | 566..809 | 1220 | 100 | Plus |
| CG5505-PD | 3117 | mule-RD | 767..1010 | 566..809 | 1220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scny-RJ | 4538 | CG5505-RJ | 333..1132 | 9..809 | 3980 | 99.9 | Plus |
| scny-RB | 3512 | CG5505-RB | 333..1132 | 9..809 | 3980 | 99.9 | Plus |
| scny-RI | 3644 | CG5505-RI | 150..831 | 127..809 | 3390 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5771497..5772296 | 9..809 | 3955 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:41:15 has no hits.
MXO52674.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:48 Download gff for
MXO52674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5505-PE | 1..800 | 9..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:42 Download gff for
MXO52674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scny-RB | 333..1132 | 9..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:59 Download gff for
MXO52674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scny-RB | 333..1132 | 9..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:59 Download gff for
MXO52674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5771497..5772296 | 9..809 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:42 Download gff for
MXO52674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5764597..5765396 | 9..809 | 99 | | Plus |
