MXO52675.5prime Sequence
830 bp (733 high quality bases) assembled on 2007-04-02
> MXO52675.5prime
CAGTCGACATGGCCGACGAAAGTCTGCACACCGTGCCCCTGGAGCACAAC
ATAGACTACCACATCGTGACGCTATTCGAGCGCCTGGAGGCGATGCGTAA
GGACTCGCACGGCGGTGGCCACGGGGTCAACAATCGCCTGTCCAGCACCC
TGCAGGCTCCCAAGCGGAGCATGCAGGCTGAGATTCGCACGCTGGAGTTT
TGGAGATCCATCATCAGCGAGTGTCTGGCCTCCTTCATGTACGTGTTCAT
CGTCTGCGGTGCCGCCGCTGGCGTCGGAGTGGGGGCCAGTGTGTCGTCCG
TGCTTTTGGCCACGGCTCTGGCCTCCGGCCTGGCGATGGCTACACTGACG
CAGTGCTTCCTCCACATCTCGGGCGCCCACATCACTCCCGCCGTAACCCT
GGCTCTATGCGTAGTGCGATCCATATCTCCGATCCGGGCTGCCATGTACA
TAACCGCACAATGTGGCGGAGGAATCGCCGGAGCTGCTCTGCTTTATGGC
GTAACTGTGCCTGGTTACCAGGGGAATCTGCAGGCCGCCATCTCACATAG
CGCTGCTCTGGCCGCCTGGGAAAGATTCGGTGTGGAATTCATCCTCACCT
TTCTGGTGGTTCTGTGCTATTTCGTATCCACGGATCCCATGAAGAAGTTC
ATGGGCAATTCGGCCGCCTCGATTGGATGTGCTTACAGCGCCTGCTGCTT
TGTGTCGATGCCGTACCTGAATCCAGCCCGCTCCCTGGGTCCTTCGTTTG
TGCTTAACAAATGGGACAGCCATTGGGTGTACTGGTTCGGACCACTGGTG
GGCGGCATGGCCTCTGGCCTGGTGTACGAG
MXO52675.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4722-PA | 2091 | bib-RA | 1..822 | 9..830 | 4085 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bib-RB | 3276 | CG4722-RB | 302..1127 | 5..830 | 4115 | 99.9 | Plus |
| bib-RA | 3276 | CG4722-RA | 302..1127 | 5..830 | 4115 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9992254..9992462 | 499..707 | 1045 | 100 | Plus |
| 2L | 23513712 | 2L | 9984946..9985146 | 5..205 | 1005 | 100 | Plus |
| 2L | 23513712 | 2L | 9986787..9986956 | 204..373 | 850 | 100 | Plus |
| 2L | 23513712 | 2L | 9987600..9987727 | 372..499 | 625 | 99.2 | Plus |
| 2L | 23513712 | 2L | 9993266..9993389 | 707..830 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:39:30 has no hits.
MXO52675.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:49 Download gff for
MXO52675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4722-PA | 1..822 | 9..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:54 Download gff for
MXO52675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bib-RA | 297..1127 | 1..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:57 Download gff for
MXO52675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bib-RA | 297..1127 | 1..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:57 Download gff for
MXO52675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9984941..9985146 | 1..205 | 99 | -> | Plus |
| 2L | 9986789..9986955 | 206..372 | 100 | -> | Plus |
| 2L | 9987601..9987727 | 373..499 | 99 | -> | Plus |
| 2L | 9992255..9992462 | 500..707 | 100 | -> | Plus |
| 2L | 9993267..9993389 | 708..830 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:54 Download gff for
MXO52675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9984941..9985146 | 1..205 | 99 | -> | Plus |
| arm_2L | 9986789..9986955 | 206..372 | 100 | -> | Plus |
| arm_2L | 9987601..9987727 | 373..499 | 99 | -> | Plus |
| arm_2L | 9992255..9992462 | 500..707 | 100 | -> | Plus |
| arm_2L | 9993267..9993389 | 708..830 | 100 | | Plus |
