MXO52678.5prime Sequence
541 bp (455 high quality bases) assembled on 2007-04-02
> MXO52678.5prime
CAGTCGACATGATCCGAGAGAGAATCATCGACTTGGAGGCAAATATCGAA
AGACGTTACTTGAAGCCGCCTTTGGGCTCGCAGACAGGCGATGCCCATTT
GGCGGTTATTGCTCAGAACCAGCATACCACCACCCAGACGCAGAACTCTG
CATCGGCAGCAGCATATCTCCTGCAGATGCAACAGCAGCAGCAGCAACAG
CAGTTGGCCCAGCAGCAGCAGCAACAGCAACAGGGTTCGGGTGCGGGAAA
TAGCCTGAATCCCTCATCCTTCAACGAGCGTACTATGGCATTGGCGGCGG
CAGCAGCTGCTTCGGGGCCAGGAAACGCAACCGGAGTAGCCAACTCGGCA
GTCGTGGCAGGAGCCACGCCCTGCGAATCGGGCAGCGGAGAACCGAATTC
CGGCAACGCGTCACCGGCCAGCAACTGTGACAGCGATCGGGACGAGAAGG
TGGAGCAGATACCCCAGGGATTGGTGCAGTGGCGGGACGCAGTATCCCGA
TCGCACACCACCGCCCAGCTGGCGATGGNCCTGTACGTTCT
MXO52678.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10897-PA | 9243 | tou-RA | 6795..7328 | 8..541 | 2626 | 99.6 | Plus |
| CG10897-PC | 2052 | tou-RC | 1..533 | 9..541 | 2621 | 99.6 | Plus |
| CG34127-PA | 3447 | CG34127-RA | 3178..3204 | 207..233 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tou-RG | 10721 | CG10897-RG | 7326..7859 | 8..541 | 2644 | 99.6 | Plus |
| tou-RF | 11743 | CG10897-RF | 6953..7486 | 8..541 | 2644 | 99.6 | Plus |
| tou-RE | 10866 | CG10897-RE | 7471..8004 | 8..541 | 2644 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11583055..11583588 | 541..8 | 2644 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:32:00 has no hits.
MXO52678.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:49 Download gff for
MXO52678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10897-PA | 6789..7328 | 1..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:32 Download gff for
MXO52678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RE | 7465..8004 | 1..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:30 Download gff for
MXO52678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RE | 7465..8004 | 1..541 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:30 Download gff for
MXO52678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11583055..11583594 | 1..541 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:32 Download gff for
MXO52678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7470560..7471099 | 1..541 | 98 | | Minus |
