Clone MXO52679 Report

Search the DGRC for MXO52679

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:526
Well:79
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptAcsl-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO52679.5prime Sequence

883 bp (732 high quality bases) assembled on 2007-04-02

> MXO52679.5prime
CAGTCGACATGTTCATCGAAGACGATGCGCAAATGGACAGCTTCTGGGTG
CAGAGCGCTATTGGCGCGATCAAGGCGATCGCCTTTGTCTACGACATCAT
CACCCTTCCGGTTTACTTGGTGCTGCAGAAGCCCTGGAAACGCCGTCAGG
ACTCGCGTCGCGTGAAGGCAAAGATCGTGCGGAATGATGACAATGAGCTG
ACCTACCGGACCACGGATCCACCACGGGATGTCCACGTGAAGATGCTGCA
AGAGAATATCGATACCCTGGAGAAGGTATTCAACTATGTGGCCAAAACTT
ACACGTCGAAGCGTTGTCTGGGCACCCGGCAGATCCTCAGCGAGGAGGAT
GAGGTGCAGCAGAACGGTCGAGTCTTCTAGAAGTACAACCTCGGTGACTA
CAAGTGGAAGACGTTCACCGAGGCGGAGCGCACGGCGGCTAATTTCGGGC
GCGGTCTGCGAGAACTTGGCCAGAAACCACGCGAGAACATTGTCATCTTT
GCCGAAACGCGAGCCGAATGGATGATAGCTGCCCACGGATGCTTCAAGCA
GGCTATGCCCATTGTCACTGTCTATGCTACGCTGGGCGATGATGGAGTTG
CTCATTGCATCACCGAAACGGAAGTCACCACGGTTATCACCTCCCATGAT
CTGCTGCCCAAGTTTAAGACGCTGCTCGACAAATGCCCATTGGTGAAGAC
TATTATCTATATTGAGGATCAGCTGCAAAAGACAGAAACCACTGGCTTCA
AGGAGGGCGTCAAGATCTTGCCGTTTAACCAAGTTGTCAAGACAGGACAG
GACAGTAAATTTGAGCACGTTCCACCCAAGGGAGATGACATTGCCATTAT
CATGTACACTTCCGGATCCACTGGCACACCTAA

MXO52679.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8732-PB 2148 l(2)44DEa-RB 1..875 9..883 4325 99.7 Plus
CG8732-PA 2148 l(2)44DEa-RA 1..875 9..883 4325 99.7 Plus
CG8732-PE 2148 l(2)44DEa-RE 1..875 9..883 4325 99.7 Plus
CG8732-PH 2148 l(2)44DEa-RH 1..875 9..883 4325 99.7 Plus
CG8732-PD 2154 l(2)44DEa-RD 30..881 32..883 4210 99.7 Plus
CG8732-PC 2124 l(2)44DEa-RC 1..851 33..883 4205 99.7 Plus
CG8732-PF 2124 l(2)44DEa-RF 1..851 33..883 4205 99.7 Plus
CG8732-PG 2124 l(2)44DEa-RG 1..851 33..883 4205 99.7 Plus
CG8732-PI 2124 l(2)44DEa-RI 1..851 33..883 4205 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
Acsl-RB 3677 CG8732-RB 344..1218 9..883 4345 99.8 Plus
Acsl-RH 3887 CG8732-RH 554..1428 9..883 4345 99.8 Plus
Acsl-RA 3704 CG8732-RA 371..1245 9..883 4345 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8678428..8678869 166..607 2180 99.5 Plus
2R 25286936 2R 8678928..8679134 607..813 1035 100 Plus
2R 25286936 2R 8676472..8676608 32..168 685 100 Plus
2R 25286936 2R 8680011..8680081 813..883 355 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:10:46 has no hits.

MXO52679.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:50 Download gff for MXO52679.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8732-PB 1..873 9..881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:57 Download gff for MXO52679.5prime
Subject Subject Range Query Range Percent Splice Strand
Acsl-RA 364..1245 1..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:54 Download gff for MXO52679.5prime
Subject Subject Range Query Range Percent Splice Strand
Acsl-RA 364..1245 1..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:54 Download gff for MXO52679.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8676472..8676607 32..167 100 -> Plus
2R 8678430..8678868 168..606 99 -> Plus
2R 8678928..8679134 607..813 100 -> Plus
2R 8680012..8680081 814..883 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:57 Download gff for MXO52679.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4566433..4566639 607..813 100 -> Plus
arm_2R 4567517..4567586 814..883 100   Plus
arm_2R 4563977..4564112 32..167 100 -> Plus
arm_2R 4565935..4566373 168..606 99 -> Plus