MXO52680.5prime Sequence
871 bp (780 high quality bases) assembled on 2007-04-02
> MXO52680.5prime
CAGTCGACATGTCCGCGGAACGAGAGATTCCCGCCGAGGACAGCATCAAA
GTGGTCTGCCGATTCCGACCGCTGAACGACAGCGAAGAGAAGGCCGGCTC
CAAGTTCGTGGTCAAGTTCCCCAACAATGTGGAGGAGAACTGCATATCCA
TAGCGGGCAAGGTGTATTTGTTCGACAAGGTCTTCAAACCGAATGCATCC
CAGGAGAAGGTCTACAATGAGGCGGCCAAGTCCATTGTTACGGATGTCCT
GGCCGGGTACAATGGAACGATATTCGCATATGGTCAGACGTCCTCCGGAA
AAACGCATACGATGGAGGGCGTGATCGGGGACTCCGTAAAACAGGGTATC
ATACCACGTATCGTCAACGACATTTTCAATCACATCTACGCGATGGAGGT
GAACCTGGAGTTTCACATCAAGGTCTCCTACTACGAGATCTACATGGACA
AGATTCGAGATCTGTTGGACGTCTCCAAGGTGAACTTAAGCGTGCACGAG
GACAAGAACCGGGTGCCGTACGTCAAGGGCGCTACGGAACGGTTCGTCTC
GTCGCCGGAGGATGTTTTCGAGGTGATCGAGGAGGGCAAATCCAATCGTC
ACATCGCTGTGACAAACATGAACGAGCATTCTTCGCGATCCCACTCAGTA
TTCCTTATCAATGTGAAGCAGGAGAACCTGGAGAACCAGAAGAAACTATC
CGGCAAACTCTACCTGGTGGATTTGGCCGGTTCCGAGAAGGTTTCCAAGA
CTGGAGCGGAGGGAACCGTTCTTGATGAAGCCAAGAACATCAACAAGTCG
CTGTCGGCCTTGGGCAACGTAATTTCTGCCCTGGCGGACGGAAACAAAAC
GCACATCCCCTACCGTGATTC
MXO52680.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7765-PA | 2928 | Khc-RA | 1..863 | 9..871 | 4290 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Khc-RA | 3718 | CG7765-RA | 487..1349 | 9..871 | 4300 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16269794..16270254 | 615..155 | 2305 | 100 | Minus |
| 2R | 25286936 | 2R | 16269400..16269655 | 871..616 | 1265 | 99.6 | Minus |
| 2R | 25286936 | 2R | 16271338..16271485 | 156..9 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:42 has no hits.
MXO52680.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:50 Download gff for
MXO52680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7765-PA | 1..863 | 9..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:07 Download gff for
MXO52680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-RA | 482..1349 | 1..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:40 Download gff for
MXO52680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-RA | 482..1349 | 1..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:40 Download gff for
MXO52680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16269400..16269655 | 616..871 | 99 | <- | Minus |
| 2R | 16269794..16270253 | 156..615 | 100 | <- | Minus |
| 2R | 16271339..16271489 | 1..155 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:07 Download gff for
MXO52680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12156905..12157160 | 616..871 | 99 | <- | Minus |
| arm_2R | 12157299..12157758 | 156..615 | 100 | <- | Minus |
| arm_2R | 12158844..12158994 | 1..155 | 97 | | Minus |
