MXO52681.5prime Sequence
850 bp (529 high quality bases) assembled on 2007-04-02
> MXO52681.5prime
CAGTCGACATGTCGGCACGTTCCAGCGGCTTGGTGGCCGCGGCGGCCCTT
CCCGTCCCGTCGTCTTCTTCCTCGGTGGCCGGCGGCGACGTGCCACGCCC
GCCGCCCCGCCGGCGAGCGGCCTCTGTTGCGGGACAACAGCAAACGCGCC
AGGAATTTGGAAATGGTTACACTCCTCGCAGATCGTTGGCAGCAGTGAAC
GACTCTGGGGACTCGTGTCACCTGCGAATCGTCGTACTCACCGGTCAGTC
GCTGGCCAAAAAGGATATATTCGGCGCCAGCGACCCGTATGTCAGAATCG
ATTTGAACACAATCAACGGTGATATTAATATTGACTCTGTTTTGACGAAG
ACCAAAAAGAAGACACTGAATCCTTCTTGGAATGACGAGTTCATATTTAG
AGTTAAACCGTCTGAGCATAAGCTTGTGTTTCAAGTATTTGACGAGAATC
GCCTGACACGCGACGACTTCCTGGGCATGGTGGAGCTGACCCTGGTGAAT
CTGCCTACCGAGCAGGAGGGTCGCACCATCAGAGAACAAAGCTACACTCT
GCGCCCGCGCAGGTCAGTAGGCGCCAAATCCCGCATCAAGGGCACACTGC
GCATCTACCACGCCTTTATCCGGGAGACGCGGGAACAAAGCGAGCCATCT
AGTGGCAATAGCGATGGCGAGTGGGAGCACGTTGAGGCCACCAATGCCGG
TGAGACGTCTGCCCAGCCGCACCCCTTTCCTACTGGTGGCCACGATGCCC
TACCCGCTGGATGGCAAGAACGCCAGGATGCCAACGGGCGCACGTACTAT
GTGAATCACACGGCGAGGACGACGCAATGCGATAGGGCTACTGTCTTAAA
MXO52681.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7555-PC | 2505 | Nedd4-RC | 370..842 | 378..850 | 2165 | 98.3 | Plus |
| CG7555-PA | 3024 | Nedd4-RA | 370..842 | 378..850 | 2165 | 98.3 | Plus |
| CG7555-PB | 2871 | Nedd4-RB | 256..728 | 378..850 | 2165 | 98.3 | Plus |
| CG7555-PC | 2505 | Nedd4-RC | 1..365 | 9..373 | 1800 | 99.7 | Plus |
| CG7555-PA | 3024 | Nedd4-RA | 1..365 | 9..373 | 1800 | 99.7 | Plus |
| CG7555-PD | 2382 | Nedd4-RD | 440..719 | 571..850 | 1275 | 98.2 | Plus |
| CG7555-PB | 2871 | Nedd4-RB | 76..251 | 198..373 | 855 | 99.4 | Plus |
| CG7555-PD | 2382 | Nedd4-RD | 76..251 | 198..373 | 855 | 99.4 | Plus |
| CG7555-PD | 2382 | Nedd4-RD | 256..440 | 378..562 | 850 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd4-RK | 3651 | CG42279-RK | 381..1222 | 9..850 | 4030 | 98.6 | Plus |
| Nedd4-RJ | 4454 | CG42279-RJ | 381..1222 | 9..850 | 4030 | 98.6 | Plus |
| Nedd4-RH | 4131 | CG42279-RH | 381..1222 | 9..850 | 4030 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17530847..17531035 | 9..197 | 945 | 100 | Plus |
| 3L | 28110227 | 3L | 17539567..17539736 | 402..571 | 820 | 98.8 | Plus |
| 3L | 28110227 | 3L | 17540690..17540838 | 571..719 | 715 | 98.7 | Plus |
| 3L | 28110227 | 3L | 17540901..17541026 | 719..844 | 585 | 97.6 | Plus |
| 3L | 28110227 | 3L | 17538811..17538895 | 278..362 | 425 | 100 | Plus |
| 3L | 28110227 | 3L | 17538661..17538744 | 197..280 | 405 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:41:29 has no hits.
MXO52681.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:51 Download gff for
MXO52681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7555-PB | 69..725 | 193..847 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:49 Download gff for
MXO52681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RH | 374..1219 | 1..847 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:07 Download gff for
MXO52681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RH | 374..1219 | 1..847 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:07 Download gff for
MXO52681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17539567..17539736 | 402..571 | 98 | -> | Plus |
| 3L | 17540691..17540838 | 572..719 | 98 | -> | Plus |
| 3L | 17540902..17541028 | 720..847 | 96 | | Plus |
| 3L | 17530840..17531035 | 1..197 | 97 | -> | Plus |
| 3L | 17538662..17538744 | 198..280 | 98 | -> | Plus |
| 3L | 17538814..17538895 | 281..362 | 100 | -> | Plus |
| 3L | 17539456..17539494 | 363..401 | 89 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:49 Download gff for
MXO52681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17533791..17533938 | 572..719 | 98 | -> | Plus |
| arm_3L | 17534002..17534128 | 720..847 | 96 | | Plus |
| arm_3L | 17523940..17524135 | 1..197 | 97 | -> | Plus |
| arm_3L | 17531762..17531844 | 198..280 | 98 | -> | Plus |
| arm_3L | 17531914..17531995 | 281..362 | 100 | -> | Plus |
| arm_3L | 17532556..17532594 | 363..401 | 89 | -> | Plus |
| arm_3L | 17532667..17532836 | 402..571 | 98 | -> | Plus |
