MXO52682.5prime Sequence
848 bp (696 high quality bases) assembled on 2007-04-02
> MXO52682.5prime
CAGTCGACATGTCGAGCGGTCAGCAATTGATGGCCGATTCGCCAGCCTGC
AGCTCAAGTGACCATTCGCCGCTGGCCAAAAAAAGGCGTTTAGAGTTGTT
GGGTGACGGAGTGGGGGCAATGGGAATGGAAGAGGAAGAAGCCGGCGGAG
CAACGAGCAGCAGTAGCAGCAACAACTACGAAAATCACGACAAAGCAGGC
GGCGTTGACATTTCGGGCAAGTGCCAGAGCAAGACGACTAGCGAGCACCA
GCTGGAATTGTGCGTATCGTCGTCTACCTCTGACACATGCGGCGTTAATG
CTGCGGCGAAGCGAGCCGAAAAGCAGAAACTGAAACAGAGCCAAGGAAGC
GGCGACGACGTTAGTACCTCGTCAGCAGTGGAAAAGGAAGGAAGCAAGCG
GCCGGAGAAGCGCAATTACCTGAACACCACCACAATAGAATCGCAAGAAG
CCTCCTCCAGTGCATCCGCCACTAGCAACAGCAACAACAACGTCAGCTCC
AGCAACAATAACAGTAATAACAGCACTAATAACCGACAACTGGAAGGAAG
CAGCAACATGGCTGGAAACAGTGCCGCCGCCGGCGGAGATATCGATGAAT
CGCTGTACTCGCGCCAATTGTACGTCCTGGGTCACGATGCGATGCGTCGG
ATGGCCAATTCGGATATCCTTCTGTCGGGACTTGGAGGACTCGGCCTGGA
GATAGCCAAGAATGTGATTCTGGGCGGCGTGAAATCGATCACCTTGCATG
ACACAGCAACTTGTGGGCTCCATGACTTGTCGTCGCAATTCTATCTCACG
GAAGCCGATATCGGCAAGAATCGTGCGGAGGCCTCTTGCGCCCAGTTG
MXO52682.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1782-PA | 3576 | Uba1-RA | 1..840 | 9..848 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uba1-RC | 4343 | CG1782-RC | 289..1128 | 9..848 | 4200 | 100 | Plus |
| Uba1-RA | 4343 | CG1782-RA | 289..1128 | 9..848 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9692282..9693040 | 767..9 | 3795 | 100 | Minus |
| 2R | 25286936 | 2R | 9691623..9691704 | 848..767 | 410 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2633..3036 | 147..560 | 214 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6843 | 470..558 | 212 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2470 | 423..558 | 202 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6874 | 423..571 | 199 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6822 | 470..558 | 194 | 73.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2410 | 470..558 | 185 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6807 | 473..558 | 185 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6915 | 373..558 | 182 | 61.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1023..1149 | 435..558 | 179 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6897 | 423..558 | 167 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6922 | 312..514 | 164 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2539 | 319..558 | 163 | 57 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1166 | 462..529 | 159 | 73.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2495 | 423..559 | 151 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1582 | 479..544 | 147 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1606 | 476..541 | 137 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2647 | 474..525 | 134 | 73.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3262..3368 | 440..540 | 134 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1504..1605 | 424..522 | 124 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1474..1573 | 456..558 | 119 | 63.8 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 531..648 | 470..584 | 115 | 56.8 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7951..8026 | 463..538 | 110 | 60.5 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9395..9470 | 463..538 | 110 | 60.5 | Plus |
MXO52682.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:51 Download gff for
MXO52682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1782-PA | 1..840 | 9..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:14 Download gff for
MXO52682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba1-RA | 285..1128 | 2..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:52 Download gff for
MXO52682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba1-RA | 285..1128 | 2..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:52 Download gff for
MXO52682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9691623..9691703 | 768..848 | 100 | <- | Minus |
| 2R | 9692282..9693044 | 2..767 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:14 Download gff for
MXO52682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5579128..5579208 | 768..848 | 100 | <- | Minus |
| arm_2R | 5579787..5580549 | 2..767 | 99 | | Minus |
