MXO52685.5prime Sequence
291 bp (291 high quality bases) assembled on 2007-04-02
> MXO52685.5prime
CAGTCGACATGTCGGATCGCAAGGCGGTGATCAAGAACGCTGACATGAGC
GAGGAGATGCAGCAGGACGCTGTTGACTGCGCCACCCAGGCCCTGGAGAA
GTACAACATCGAGAAGGACATCGCCGCCTTCATCAAGAAGGAGTTCGACA
AGAAGTACAACCCCACCTGGCACTGCATCGTGGGCCGCAACTTCGGATCC
TATGTGACCCACGAGACGCGCCACTTCATCTATTTCTACCTGGGCCAGGT
GGCCATTCTGCTCTTCAAGAGCGGTGCAAGCTTTCTAGACC
MXO52685.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5450-PA | 270 | Cdlc2-RA | 1..267 | 9..275 | 1335 | 100 | Plus |
CG5450-PB | 270 | Cdlc2-RB | 1..267 | 9..275 | 1335 | 100 | Plus |
CG6998-PB | 270 | ctp-RB | 79..218 | 87..226 | 250 | 87.1 | Plus |
CG6998-PD | 270 | ctp-RD | 79..218 | 87..226 | 250 | 87.1 | Plus |
CG6998-PA | 270 | ctp-RA | 79..218 | 87..226 | 250 | 87.1 | Plus |
CG6998-PC | 270 | ctp-RC | 79..218 | 87..226 | 250 | 87.1 | Plus |
CG6998-PB | 270 | ctp-RB | 1..59 | 9..67 | 145 | 89.8 | Plus |
CG6998-PD | 270 | ctp-RD | 1..59 | 9..67 | 145 | 89.8 | Plus |
CG6998-PA | 270 | ctp-RA | 1..59 | 9..67 | 145 | 89.8 | Plus |
CG6998-PC | 270 | ctp-RC | 1..59 | 9..67 | 145 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdlc2-RC | 671 | CG5450-RC | 152..418 | 9..275 | 1335 | 100 | Plus |
Cdlc2-RB | 621 | CG5450-RB | 102..368 | 9..275 | 1335 | 100 | Plus |
Cdlc2-RA | 675 | CG5450-RA | 156..422 | 9..275 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1344616..1344882 | 9..275 | 1335 | 100 | Plus |
X | 23542271 | X | 4698295..4698455 | 115..275 | 430 | 84.5 | Plus |
X | 23542271 | X | 4691737..4691845 | 9..117 | 305 | 85.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:51:31 has no hits.
MXO52685.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:52 Download gff for
MXO52685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5450-PA | 1..270 | 9..279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:36 Download gff for
MXO52685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 147..425 | 1..279 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:09 Download gff for
MXO52685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 147..425 | 1..279 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:09 Download gff for
MXO52685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1344607..1344885 | 1..279 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:36 Download gff for
MXO52685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1344607..1344885 | 1..279 | 97 | | Plus |