MXO52686.5prime Sequence
849 bp (820 high quality bases) assembled on 2007-04-02
> MXO52686.5prime
CAGTCGACATGACGACCAAGCACATCTATTCCACGACCAATTTATCAGAT
CTGCAATTAAAGGAGCAGGGAAACTGCTTGTTTGCAGCCCGAAAATATGA
CGACGCAATAAATTGCTACTCAAAGGCCATCATAAAGAACCCCACAAACG
CCACATACTTCACAAACCGAGCCCTCTGCAACCTGAAACTGAAGAGATGG
GAACTGTGCTGCCAGGATAGTCGGCGCGCCCTCGACATCGATGGGAATCT
GTTGAAGGGTCACTTCTTCCTGGGCCAAGGACTCATGGAAATCGACAACT
TTGACGAGGCTATAAAGCACCTTCAACGGGCATACGATCTGTCCAAGGAG
CAGAAGCAAAACTTTGGGGATGATATTACACTACAGTTGCGACTAGCTCG
CAAAAAGCGCTGGAATGTTATGGAGGAGAAGCGAATACAGCAGGAAATCG
AGCTGCAAAGCTATTTAAATGGTCTAATAAAAGGGGACATGGAAAGCCGT
TTGGCCAATTTAAAGCTGAATGGAAATGTACACGATGAGCAGCTGAAAGA
CAAGCAACAGGAAATTGAGCAAGAATGCGATGACCATATTAAGGAACTTA
ACAATATATTTTCTAAGGTTGACGAACGTCGAAAGAAACGTGAAGTTCCC
GATTTTCTATGTGGCAAAATAAGTTTTGAAATATTAACAGACCCTGTGAT
AACTCCATCTGGAATTACGTATGAACGAAAAGATATAGAAGAACACTTGC
AGCGGGTTGGACATTTCGATCCTGTGACACGCGTTAAGCTCACTCAGGAT
CAACTAATACCAAATTTTTCAATGAAGGAAGTGGTTGACTCTTTTATTG
MXO52686.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5203-PA | 870 | CHIP-RA | 1..841 | 9..849 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CHIP-RA | 1277 | CG5203-RA | 292..1132 | 9..849 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10438880..10439095 | 634..849 | 1080 | 100 | Plus |
| 2L | 23513712 | 2L | 10438041..10438239 | 132..330 | 995 | 100 | Plus |
| 2L | 23513712 | 2L | 10438300..10438442 | 330..472 | 715 | 100 | Plus |
| 2L | 23513712 | 2L | 10437839..10437961 | 9..131 | 615 | 100 | Plus |
| 2L | 23513712 | 2L | 10438590..10438697 | 472..579 | 540 | 100 | Plus |
| 2L | 23513712 | 2L | 10438756..10438812 | 579..635 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:41:39 has no hits.
MXO52686.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:52 Download gff for
MXO52686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5203-PA | 1..841 | 9..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:57 Download gff for
MXO52686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHIP-RA | 285..1132 | 1..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:13 Download gff for
MXO52686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHIP-RA | 285..1132 | 1..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:13 Download gff for
MXO52686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10437832..10437961 | 1..131 | 96 | -> | Plus |
| 2L | 10438041..10438239 | 132..330 | 100 | -> | Plus |
| 2L | 10438301..10438442 | 331..472 | 100 | -> | Plus |
| 2L | 10438591..10438696 | 473..578 | 100 | -> | Plus |
| 2L | 10438756..10438812 | 579..635 | 100 | -> | Plus |
| 2L | 10438882..10439095 | 636..849 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:57 Download gff for
MXO52686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10437832..10437961 | 1..131 | 96 | -> | Plus |
| arm_2L | 10438041..10438239 | 132..330 | 100 | -> | Plus |
| arm_2L | 10438301..10438442 | 331..472 | 100 | -> | Plus |
| arm_2L | 10438591..10438696 | 473..578 | 100 | -> | Plus |
| arm_2L | 10438756..10438812 | 579..635 | 100 | -> | Plus |
| arm_2L | 10438882..10439095 | 636..849 | 100 | | Plus |
