MXO52688.5prime Sequence
561 bp (561 high quality bases) assembled on 2007-04-02
> MXO52688.5prime
CAGTCGACATGGGTCTGCTATCGCTGTTGCGTAAACTGAGACCCAATCCG
GAAAAGGAGGCTCGCATCCTGCTCCTAGGATTGGATAATGCTGGCAAGAC
CACGATACTGAAGCAGCTGGCATCGGAGGACATAACCACGGTAACGCCCA
CGGCAGGATTTAACATCAAGTCCGTGGCAGCCGATGGTTTCAAACTGAAT
GTATGGGATATTGGTGGTCAATGGAAGATACGTCCATATTGGAAGAACTA
TTTTGCGAATACTGATGTGCTGATCTATGTAATTGACTGTACAGATCGGA
CTCGCCTGCCCGAGGCGGGTAGTGAACTATTCGAAATGCTCATGGACAAT
CGGTTGAAGCAAGTTCCCGTGCTGATTTTCGCTAACAAACAGGATATGCC
GGATGCCATGAGTGCCGCCGAGGTGGCCGAGAAGATGAGCTTGGTGCAAC
TGCAGGGACGAACCTGGGAGATCAAGGCCTGTACCGCTGTGGATGGCACT
GGACTAAAGGAGGGAATGGACTGGGTCTGCAAGAATATGAAGAAGGCAAG
CTTTCTAGACC
MXO52688.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6560-PA | 540 | CG6560-RA | 1..537 | 9..545 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnd-RA | 836 | CG6560-RA | 214..750 | 9..545 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21885762..21886035 | 545..272 | 1370 | 100 | Minus |
| 3R | 32079331 | 3R | 21886093..21886225 | 272..140 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 21886286..21886417 | 142..11 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:41:48 has no hits.
MXO52688.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:53 Download gff for
MXO52688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6560-PA | 1..540 | 9..549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:04 Download gff for
MXO52688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnd-RA | 214..756 | 9..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:20 Download gff for
MXO52688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnd-RA | 214..756 | 9..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:20 Download gff for
MXO52688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21886288..21886417 | 11..140 | 100 | | Minus |
| 3R | 21885756..21886034 | 273..552 | 98 | <- | Minus |
| 3R | 21886093..21886224 | 141..272 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:04 Download gff for
MXO52688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17711478..17711756 | 273..552 | 98 | <- | Minus |
| arm_3R | 17711815..17711946 | 141..272 | 100 | <- | Minus |
| arm_3R | 17712010..17712139 | 11..140 | 100 | | Minus |
