MXO52689.5prime Sequence
737 bp (609 high quality bases) assembled on 2007-04-02
> MXO52689.5prime
CAGTCGACATGTGTGACGAAGAACCTGCTGCTCTGGTTGTCGACAACGGC
TCTGGCATGTGCAAGGCCGGATTTGCCGGAGACGATGCTCCCCGCGCCGT
CTTCCCATCGATTGTGGGACGTCCCCGTCACCAGGGTGTGATGGTCGGCA
TGGGCCAGAAGGACTCGTACGTGGGTGATGAGGCGCAGAGCAAGCGTGGT
ATCCTCACCCTGAAGTACCCCATTGAGCACGGTATCGTGACCAACTGGGA
CGATATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGG
CACCCGAGGAGCACCCCGTGCTGCTGACCGAGGCCCCGCTGAACCCCAAG
GCCAACCGTGAGAAGATGACCCATATCATGTTCGAGACCTTCAACACACC
CGCCATGTATGTGGCCATCCAGGCTGTGCTCTCGCTGTACGCCTCCGGTC
GTACCACCGGTATCGTTCTGGACTCCGGCGATGGTGTCTCCCACACCGTG
CCCATCTACGAGGGTTATGCCCTTCCCCATGCCATCCTGCGTCTGGATCT
GGCTGGTCGCGATTTGACCGACTACCTGATGAAGATCCTGACCGAGCGCG
GTTACTCTTTCCCCACCTCCGCTGAGCGTGAAATCGTCCGTGACATCAAG
GATAATCTGTGCTATGTTGACCTCCACTTTGAGCACGATATGGTCTCCGC
TGACCCTAGCTCCTCGTTGGAGAACTCCTACCAGCTG
MXO52689.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4027-PB | 1131 | Act5C-RB | 1..677 | 9..685 | 3160 | 98.6 | Plus |
CG4027-PA | 1131 | Act5C-RA | 1..677 | 9..685 | 3160 | 98.6 | Plus |
CG4027-PC | 1131 | Act5C-RC | 1..677 | 9..685 | 3160 | 98.6 | Plus |
CG4027-PD | 1131 | Act5C-RD | 1..677 | 9..685 | 3160 | 98.6 | Plus |
CG18290-PA | 1131 | Act87E-RA | 49..677 | 57..685 | 1845 | 91.7 | Plus |
CG18290-PB | 1131 | Act87E-RB | 49..677 | 57..685 | 1845 | 91.7 | Plus |
CG10067-PA | 1131 | Act57B-RA | 121..661 | 129..669 | 1730 | 92.7 | Plus |
CG7478-PA | 1131 | Act79B-RA | 232..593 | 240..601 | 1010 | 91.1 | Plus |
CG5178-PA | 1131 | Act88F-RA | 317..506 | 325..514 | 600 | 92.6 | Plus |
CG5178-PA | 1131 | Act88F-RA | 32..305 | 40..313 | 545 | 87.9 | Plus |
CG12051-PA | 1131 | Act42A-RA | 112..311 | 120..319 | 450 | 89 | Plus |
CG12051-PA | 1131 | Act42A-RA | 332..597 | 340..605 | 405 | 86 | Plus |
CG7478-PA | 1131 | Act79B-RA | 34..197 | 42..205 | 370 | 89 | Plus |
CG5178-PA | 1131 | Act88F-RA | 511..593 | 519..601 | 265 | 92.7 | Plus |
CG10067-PA | 1131 | Act57B-RA | 1..98 | 9..106 | 165 | 86.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Act5C-RE | 2863 | CG4027-RE | 162..890 | 9..737 | 3360 | 97.4 | Plus |
Act5C-RD | 1928 | CG4027-RD | 162..890 | 9..737 | 3360 | 97.4 | Plus |
Act5C-RC | 2252 | CG4027-RC | 162..890 | 9..737 | 3360 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5902698..5903426 | 9..737 | 3360 | 97.4 | Plus |
3R | 32079331 | 3R | 13426604..13427295 | 9..700 | 2425 | 90 | Plus |
2R | 25286936 | 2R | 20944843..20945495 | 48..700 | 2350 | 90.7 | Plus |
3R | 32079331 | 3R | 15440616..15441338 | 9..731 | 2070 | 85.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:41:59 has no hits.
MXO52689.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:54 Download gff for
MXO52689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4027-PC | 1..729 | 9..737 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:10 Download gff for
MXO52689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Act5C-RA | 162..890 | 9..737 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:24 Download gff for
MXO52689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Act5C-RC | 162..890 | 9..737 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:24 Download gff for
MXO52689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5902698..5903426 | 9..737 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:10 Download gff for
MXO52689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5796731..5797459 | 9..737 | 97 | | Plus |