Clone MXO52689 Report

Search the DGRC for MXO52689

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:526
Well:89
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptAct5C-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO52689.5prime Sequence

737 bp (609 high quality bases) assembled on 2007-04-02

> MXO52689.5prime
CAGTCGACATGTGTGACGAAGAACCTGCTGCTCTGGTTGTCGACAACGGC
TCTGGCATGTGCAAGGCCGGATTTGCCGGAGACGATGCTCCCCGCGCCGT
CTTCCCATCGATTGTGGGACGTCCCCGTCACCAGGGTGTGATGGTCGGCA
TGGGCCAGAAGGACTCGTACGTGGGTGATGAGGCGCAGAGCAAGCGTGGT
ATCCTCACCCTGAAGTACCCCATTGAGCACGGTATCGTGACCAACTGGGA
CGATATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGG
CACCCGAGGAGCACCCCGTGCTGCTGACCGAGGCCCCGCTGAACCCCAAG
GCCAACCGTGAGAAGATGACCCATATCATGTTCGAGACCTTCAACACACC
CGCCATGTATGTGGCCATCCAGGCTGTGCTCTCGCTGTACGCCTCCGGTC
GTACCACCGGTATCGTTCTGGACTCCGGCGATGGTGTCTCCCACACCGTG
CCCATCTACGAGGGTTATGCCCTTCCCCATGCCATCCTGCGTCTGGATCT
GGCTGGTCGCGATTTGACCGACTACCTGATGAAGATCCTGACCGAGCGCG
GTTACTCTTTCCCCACCTCCGCTGAGCGTGAAATCGTCCGTGACATCAAG
GATAATCTGTGCTATGTTGACCTCCACTTTGAGCACGATATGGTCTCCGC
TGACCCTAGCTCCTCGTTGGAGAACTCCTACCAGCTG

MXO52689.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4027-PB 1131 Act5C-RB 1..677 9..685 3160 98.6 Plus
CG4027-PA 1131 Act5C-RA 1..677 9..685 3160 98.6 Plus
CG4027-PC 1131 Act5C-RC 1..677 9..685 3160 98.6 Plus
CG4027-PD 1131 Act5C-RD 1..677 9..685 3160 98.6 Plus
CG18290-PA 1131 Act87E-RA 49..677 57..685 1845 91.7 Plus
CG18290-PB 1131 Act87E-RB 49..677 57..685 1845 91.7 Plus
CG10067-PA 1131 Act57B-RA 121..661 129..669 1730 92.7 Plus
CG7478-PA 1131 Act79B-RA 232..593 240..601 1010 91.1 Plus
CG5178-PA 1131 Act88F-RA 317..506 325..514 600 92.6 Plus
CG5178-PA 1131 Act88F-RA 32..305 40..313 545 87.9 Plus
CG12051-PA 1131 Act42A-RA 112..311 120..319 450 89 Plus
CG12051-PA 1131 Act42A-RA 332..597 340..605 405 86 Plus
CG7478-PA 1131 Act79B-RA 34..197 42..205 370 89 Plus
CG5178-PA 1131 Act88F-RA 511..593 519..601 265 92.7 Plus
CG10067-PA 1131 Act57B-RA 1..98 9..106 165 86.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
Act5C-RE 2863 CG4027-RE 162..890 9..737 3360 97.4 Plus
Act5C-RD 1928 CG4027-RD 162..890 9..737 3360 97.4 Plus
Act5C-RC 2252 CG4027-RC 162..890 9..737 3360 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5902698..5903426 9..737 3360 97.4 Plus
3R 32079331 3R 13426604..13427295 9..700 2425 90 Plus
2R 25286936 2R 20944843..20945495 48..700 2350 90.7 Plus
3R 32079331 3R 15440616..15441338 9..731 2070 85.8 Plus
Blast to na_te.dros performed on 2014-11-28 21:41:59 has no hits.

MXO52689.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:54 Download gff for MXO52689.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4027-PC 1..729 9..737 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:10 Download gff for MXO52689.5prime
Subject Subject Range Query Range Percent Splice Strand
Act5C-RA 162..890 9..737 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:24 Download gff for MXO52689.5prime
Subject Subject Range Query Range Percent Splice Strand
Act5C-RC 162..890 9..737 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:24 Download gff for MXO52689.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5902698..5903426 9..737 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:10 Download gff for MXO52689.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5796731..5797459 9..737 97   Plus