MXO52690.5prime Sequence
687 bp (637 high quality bases) assembled on 2007-04-02
> MXO52690.5prime
CAGTCGACATGATGAGCCTGACTGTGCTCTCGCCACCGCAACGTTTTAAG
CGAATCCTGCAAGCCATGATGTTAGCCGTCGCCGTCGTCTATATGACCCT
ACTGCTCTACCAGAGCGCCTACGGATATCCGGGCATCCAAGTGCCGCACA
GCCAGGTGGATGCCCTTGCCAGCGAAGCCGTGACCACACATCGCGACCAG
CTGCTCCAGGACTACGTGCAGTCCTCCACGCCCACCCAGCCGGGGGCTGG
AGCTCCGGCCGCCTCCCCCACCACCGTCATAATCCGCAAGGATATACGCA
GCTTCAATTTCAGCGACATCGAGGTCAGTGAGCGGCCCACGGCCACGCTG
CTAACAGAATTGGCCAGAAGGAGCCGGAATGGGGAACTGCTCCGCGATCT
GTCCCAAAGAGCGGTGACGGCGACACCACAGCCGCCGGTCACCGAGTTGG
ATGACATTTTCATCAGCGTAAAGACGACGAAGAACTATCACGACACCCGG
CTGGCGTTGATCATCAAGACCTGGTTCCAATTGGCCCGCGATCAGACCTG
GTTCTTCACGGACACCGATGATCACTACTACCAGGGAGAAGACAAAGGGC
CATCTCATCAACACGAAATGCTCACAGGGCCATTTTCGCAAGGCGCTTTG
CTGCAAAATGTCCGCTGAATTTGGATGTCTTCCTGGA
MXO52690.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10580-PA | 1239 | fng-RA | 1..577 | 9..585 | 2885 | 100 | Plus |
| CG10580-PA | 1239 | fng-RA | 576..662 | 585..671 | 435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fng-RA | 1959 | CG10580-RA | 212..888 | 9..687 | 3345 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20943564..20943968 | 545..141 | 2025 | 100 | Minus |
| 3L | 28110227 | 3L | 20949167..20949301 | 143..9 | 675 | 100 | Minus |
| 3L | 28110227 | 3L | 20935425..20935515 | 687..596 | 410 | 98.9 | Minus |
| 3L | 28110227 | 3L | 20936675..20936717 | 585..543 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:34 has no hits.
MXO52690.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:54 Download gff for
MXO52690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10580-PA | 1..676 | 9..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:12 Download gff for
MXO52690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fng-RA | 209..887 | 5..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:45 Download gff for
MXO52690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fng-RA | 209..887 | 5..686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:45 Download gff for
MXO52690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20935426..20935515 | 596..686 | 98 | <- | Minus |
| 3L | 20936666..20936714 | 546..595 | 98 | <- | Minus |
| 3L | 20943564..20943968 | 141..545 | 100 | <- | Minus |
| 3L | 20949170..20949304 | 5..140 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:12 Download gff for
MXO52690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20928526..20928615 | 596..686 | 98 | <- | Minus |
| arm_3L | 20929766..20929814 | 546..595 | 98 | <- | Minus |
| arm_3L | 20936664..20937068 | 141..545 | 100 | <- | Minus |
| arm_3L | 20942270..20942404 | 5..140 | 98 | | Minus |
