MXO52693.5prime Sequence
328 bp (318 high quality bases) assembled on 2007-04-02
> MXO52693.5prime
CAGTCGACATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACC
TTGGAGGTGGAGCCTTCTGACACCATCGAGAATGTCAAGGCTAAGATCCA
GGATAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCA
AGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATTCAGAAGGAG
TCCACCCTGCACTTGGTGCTCCGCCTGCGTGGTGGTATCATTGAGCCCTC
GCTCAGGATTCTGGCCCAGAAGTACAACTGCGACAAGATGATCTGCCGCA
AGTGCTACGCCCGTCTGCATCCTCGTGC
MXO52693.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2960-PA | 387 | RpL40-RA | 1..320 | 9..328 | 1600 | 100 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 709..914 | 33..238 | 530 | 90.2 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 1393..1598 | 33..238 | 530 | 90.2 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 1849..2054 | 33..238 | 530 | 90.2 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 709..914 | 33..238 | 530 | 90.2 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 1393..1598 | 33..238 | 530 | 90.2 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 1849..2054 | 33..238 | 530 | 90.2 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 709..914 | 33..238 | 530 | 90.2 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 1393..1598 | 33..238 | 530 | 90.2 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 1849..2054 | 33..238 | 530 | 90.2 | Plus |
CG32744-PA | 1605 | CG32744-RA | 228..455 | 8..235 | 515 | 89 | Plus |
CG32744-PA | 1605 | CG32744-RA | 1368..1595 | 8..235 | 490 | 88.5 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 2077..2267 | 33..223 | 480 | 90 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 481..686 | 33..238 | 480 | 89.3 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 937..1142 | 33..238 | 480 | 89.3 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 1165..1370 | 33..238 | 480 | 89.3 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 1621..1826 | 33..238 | 480 | 89.3 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 937..1142 | 33..238 | 480 | 89.3 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 1165..1370 | 33..238 | 480 | 89.3 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 2077..2267 | 33..223 | 480 | 90 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 481..686 | 33..238 | 480 | 89.3 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 1621..1826 | 33..238 | 480 | 89.3 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 1621..1826 | 33..238 | 480 | 89.3 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 2077..2267 | 33..223 | 480 | 90 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 481..686 | 33..238 | 480 | 89.3 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 937..1142 | 33..238 | 480 | 89.3 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 1165..1370 | 33..238 | 480 | 89.3 | Plus |
CG32744-PA | 1605 | CG32744-RA | 1140..1349 | 8..217 | 475 | 89 | Plus |
CG32744-PA | 1605 | CG32744-RA | 456..665 | 8..217 | 475 | 89 | Plus |
CG32744-PA | 1605 | CG32744-RA | 684..893 | 8..217 | 475 | 89 | Plus |
CG32744-PA | 1605 | CG32744-RA | 19..227 | 27..235 | 470 | 88.9 | Plus |
CG32744-PA | 1605 | CG32744-RA | 912..1139 | 8..235 | 465 | 88.1 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 25..230 | 33..238 | 455 | 88.8 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 253..458 | 33..238 | 455 | 88.8 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 25..230 | 33..238 | 455 | 88.8 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 253..458 | 33..238 | 455 | 88.8 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 25..230 | 33..238 | 455 | 88.8 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 253..458 | 33..238 | 455 | 88.8 | Plus |
CG5271-PA | 471 | RpS27A-RA | 106..228 | 114..236 | 390 | 92.6 | Plus |
CG11700-PA | 906 | CG11700-RA | 553..683 | 105..235 | 255 | 87.7 | Plus |
CG11700-PA | 906 | CG11700-RA | 793..884 | 117..208 | 235 | 90.2 | Plus |
CG11700-PA | 906 | CG11700-RA | 228..331 | 8..111 | 195 | 87.5 | Plus |
CG11700-PA | 906 | CG11700-RA | 1..103 | 9..111 | 190 | 87.3 | Plus |
CG11700-PA | 906 | CG11700-RA | 456..512 | 8..64 | 185 | 92.9 | Plus |
CG11700-PA | 906 | CG11700-RA | 684..740 | 8..64 | 185 | 92.9 | Plus |
CG11700-PA | 906 | CG11700-RA | 388..422 | 168..202 | 150 | 97.1 | Plus |
CG11700-PA | 906 | CG11700-RA | 160..194 | 168..202 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL40-RB | 659 | CG2960-RB | 123..442 | 9..328 | 1600 | 100 | Plus |
RpL40-RA | 587 | CG2960-RA | 65..384 | 9..328 | 1600 | 100 | Plus |
Ubi-p63E-RD | 2624 | CG11624-RD | 808..1037 | 9..238 | 790 | 89.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4228025..4228344 | 9..328 | 1600 | 100 | Plus |
3L | 28110227 | 3L | 3899706..3899935 | 238..9 | 790 | 89.6 | Minus |
3L | 28110227 | 3L | 3900162..3900391 | 238..9 | 790 | 89.6 | Minus |
3L | 28110227 | 3L | 3900846..3901075 | 238..9 | 790 | 89.6 | Minus |
X | 23542271 | X | 6278294..6278521 | 235..8 | 765 | 89 | Minus |
3L | 28110227 | 3L | 3899934..3900163 | 238..9 | 760 | 88.7 | Minus |
3L | 28110227 | 3L | 3900390..3900619 | 238..9 | 760 | 88.7 | Minus |
3L | 28110227 | 3L | 3900618..3900847 | 238..9 | 760 | 88.7 | Minus |
3L | 28110227 | 3L | 3901074..3901303 | 238..9 | 760 | 88.7 | Minus |
3L | 28110227 | 3L | 3899477..3899707 | 239..9 | 750 | 88.3 | Minus |
3L | 28110227 | 3L | 3901302..3901531 | 238..9 | 745 | 88.3 | Minus |
3L | 28110227 | 3L | 3901530..3901759 | 238..9 | 730 | 87.8 | Minus |
2L | 23513712 | 2L | 10409731..10409958 | 9..236 | 705 | 87.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:32:10 has no hits.
MXO52693.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:56 Download gff for
MXO52693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2960-PA | 1..320 | 9..328 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:38 Download gff for
MXO52693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL40-RA | 65..384 | 9..328 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:38 Download gff for
MXO52693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL40-RA | 65..384 | 9..328 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:38 Download gff for
MXO52693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4228025..4228344 | 9..328 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:38 Download gff for
MXO52693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4228025..4228344 | 9..328 | 100 | | Plus |