Clone MXO52693 Report

Search the DGRC for MXO52693

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:526
Well:93
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptRpL40-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO52693.5prime Sequence

328 bp (318 high quality bases) assembled on 2007-04-02

> MXO52693.5prime
CAGTCGACATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACC
TTGGAGGTGGAGCCTTCTGACACCATCGAGAATGTCAAGGCTAAGATCCA
GGATAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCA
AGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATTCAGAAGGAG
TCCACCCTGCACTTGGTGCTCCGCCTGCGTGGTGGTATCATTGAGCCCTC
GCTCAGGATTCTGGCCCAGAAGTACAACTGCGACAAGATGATCTGCCGCA
AGTGCTACGCCCGTCTGCATCCTCGTGC

MXO52693.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2960-PA 387 RpL40-RA 1..320 9..328 1600 100 Plus
CG11624-PA 2292 Ubi-p63E-RA 709..914 33..238 530 90.2 Plus
CG11624-PA 2292 Ubi-p63E-RA 1393..1598 33..238 530 90.2 Plus
CG11624-PA 2292 Ubi-p63E-RA 1849..2054 33..238 530 90.2 Plus
CG11624-PC 2292 Ubi-p63E-RC 709..914 33..238 530 90.2 Plus
CG11624-PC 2292 Ubi-p63E-RC 1393..1598 33..238 530 90.2 Plus
CG11624-PC 2292 Ubi-p63E-RC 1849..2054 33..238 530 90.2 Plus
CG11624-PB 2292 Ubi-p63E-RB 709..914 33..238 530 90.2 Plus
CG11624-PB 2292 Ubi-p63E-RB 1393..1598 33..238 530 90.2 Plus
CG11624-PB 2292 Ubi-p63E-RB 1849..2054 33..238 530 90.2 Plus
CG32744-PA 1605 CG32744-RA 228..455 8..235 515 89 Plus
CG32744-PA 1605 CG32744-RA 1368..1595 8..235 490 88.5 Plus
CG11624-PA 2292 Ubi-p63E-RA 2077..2267 33..223 480 90 Plus
CG11624-PA 2292 Ubi-p63E-RA 481..686 33..238 480 89.3 Plus
CG11624-PA 2292 Ubi-p63E-RA 937..1142 33..238 480 89.3 Plus
CG11624-PA 2292 Ubi-p63E-RA 1165..1370 33..238 480 89.3 Plus
CG11624-PA 2292 Ubi-p63E-RA 1621..1826 33..238 480 89.3 Plus
CG11624-PC 2292 Ubi-p63E-RC 937..1142 33..238 480 89.3 Plus
CG11624-PC 2292 Ubi-p63E-RC 1165..1370 33..238 480 89.3 Plus
CG11624-PC 2292 Ubi-p63E-RC 2077..2267 33..223 480 90 Plus
CG11624-PC 2292 Ubi-p63E-RC 481..686 33..238 480 89.3 Plus
CG11624-PC 2292 Ubi-p63E-RC 1621..1826 33..238 480 89.3 Plus
CG11624-PB 2292 Ubi-p63E-RB 1621..1826 33..238 480 89.3 Plus
CG11624-PB 2292 Ubi-p63E-RB 2077..2267 33..223 480 90 Plus
CG11624-PB 2292 Ubi-p63E-RB 481..686 33..238 480 89.3 Plus
CG11624-PB 2292 Ubi-p63E-RB 937..1142 33..238 480 89.3 Plus
CG11624-PB 2292 Ubi-p63E-RB 1165..1370 33..238 480 89.3 Plus
CG32744-PA 1605 CG32744-RA 1140..1349 8..217 475 89 Plus
CG32744-PA 1605 CG32744-RA 456..665 8..217 475 89 Plus
CG32744-PA 1605 CG32744-RA 684..893 8..217 475 89 Plus
CG32744-PA 1605 CG32744-RA 19..227 27..235 470 88.9 Plus
CG32744-PA 1605 CG32744-RA 912..1139 8..235 465 88.1 Plus
CG11624-PA 2292 Ubi-p63E-RA 25..230 33..238 455 88.8 Plus
CG11624-PA 2292 Ubi-p63E-RA 253..458 33..238 455 88.8 Plus
CG11624-PC 2292 Ubi-p63E-RC 25..230 33..238 455 88.8 Plus
CG11624-PC 2292 Ubi-p63E-RC 253..458 33..238 455 88.8 Plus
CG11624-PB 2292 Ubi-p63E-RB 25..230 33..238 455 88.8 Plus
CG11624-PB 2292 Ubi-p63E-RB 253..458 33..238 455 88.8 Plus
CG5271-PA 471 RpS27A-RA 106..228 114..236 390 92.6 Plus
CG11700-PA 906 CG11700-RA 553..683 105..235 255 87.7 Plus
CG11700-PA 906 CG11700-RA 793..884 117..208 235 90.2 Plus
CG11700-PA 906 CG11700-RA 228..331 8..111 195 87.5 Plus
CG11700-PA 906 CG11700-RA 1..103 9..111 190 87.3 Plus
CG11700-PA 906 CG11700-RA 456..512 8..64 185 92.9 Plus
CG11700-PA 906 CG11700-RA 684..740 8..64 185 92.9 Plus
CG11700-PA 906 CG11700-RA 388..422 168..202 150 97.1 Plus
CG11700-PA 906 CG11700-RA 160..194 168..202 150 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
RpL40-RB 659 CG2960-RB 123..442 9..328 1600 100 Plus
RpL40-RA 587 CG2960-RA 65..384 9..328 1600 100 Plus
Ubi-p63E-RD 2624 CG11624-RD 808..1037 9..238 790 89.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4228025..4228344 9..328 1600 100 Plus
3L 28110227 3L 3899706..3899935 238..9 790 89.6 Minus
3L 28110227 3L 3900162..3900391 238..9 790 89.6 Minus
3L 28110227 3L 3900846..3901075 238..9 790 89.6 Minus
X 23542271 X 6278294..6278521 235..8 765 89 Minus
3L 28110227 3L 3899934..3900163 238..9 760 88.7 Minus
3L 28110227 3L 3900390..3900619 238..9 760 88.7 Minus
3L 28110227 3L 3900618..3900847 238..9 760 88.7 Minus
3L 28110227 3L 3901074..3901303 238..9 760 88.7 Minus
3L 28110227 3L 3899477..3899707 239..9 750 88.3 Minus
3L 28110227 3L 3901302..3901531 238..9 745 88.3 Minus
3L 28110227 3L 3901530..3901759 238..9 730 87.8 Minus
2L 23513712 2L 10409731..10409958 9..236 705 87.3 Plus
Blast to na_te.dros performed on 2014-11-28 23:32:10 has no hits.

MXO52693.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:56 Download gff for MXO52693.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2960-PA 1..320 9..328 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:38 Download gff for MXO52693.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL40-RA 65..384 9..328 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:38 Download gff for MXO52693.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL40-RA 65..384 9..328 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:38 Download gff for MXO52693.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4228025..4228344 9..328 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:38 Download gff for MXO52693.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4228025..4228344 9..328 100   Plus