MXO52694.5prime Sequence
597 bp (597 high quality bases) assembled on 2007-04-02
> MXO52694.5prime
CAGTCGACATGATAAAAGCCATTCTCGTTTTTAACAATCACGGGAAGCCG
CGGCTATCGAAGTTCTATCAGTATTTCGATGAAAGCCTGCAGCAACAAAT
AATCAAAGAGACTTTCCAATTGGTGTCCAAGCGGGACGATAATGTTTGCA
ACTTTCTGGAGGGCGGAAGTTTGATTGGCGGATCGGATTACAAACTCATC
TACAGACACTATGCCACGCTGTACTTCGTTTTCTGCGTGGACTCCTCGGA
GAGCGAACTGGGAATCCTGGACCTGATTCAGGTGTTCGTGGAAACCCTCG
ACAAGTGCTTCGAAAACGTGTGTGAGCTGGACCTGATATTCCACGCCGAT
GCCGTCCACCACATCCTCTCAGAACTGGTAATGGGCGGAATGGTCCTGCA
GACAAATATGAACGACATAATGGCCAGGATCGAGGAGCAGAACAAGATCG
TCAAGCAGGAAGCGGGCATCTCGGCTGCACCTGCCCGAGCTGTGAGCGCC
GTGAAGAGTATGAACATTCCGCAACAGATTAAAGACATCAAGCTACCTGA
TCTGCCGCAGGCCATTAAGGACTTTAAGTTCGCAAGCTTTCTAGACC
MXO52694.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3029-PA | 576 | or-RA | 1..573 | 9..581 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| or-RA | 823 | CG3029-RA | 75..654 | 2..581 | 2870 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23968562..23968774 | 369..581 | 1065 | 100 | Plus |
| 2R | 25286936 | 2R | 23968304..23968508 | 168..372 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 23968153..23968244 | 78..169 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 23968013..23968089 | 2..78 | 355 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:10:53 has no hits.
MXO52694.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:56 Download gff for
MXO52694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3029-PA | 1..576 | 9..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:01 Download gff for
MXO52694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| or-RA | 74..660 | 1..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:58 Download gff for
MXO52694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| or-RA | 74..660 | 1..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:58 Download gff for
MXO52694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23968012..23968088 | 1..77 | 96 | -> | Plus |
| 2R | 23968153..23968244 | 78..169 | 100 | -> | Plus |
| 2R | 23968306..23968508 | 170..372 | 100 | -> | Plus |
| 2R | 23968566..23968780 | 373..585 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:01 Download gff for
MXO52694.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19855535..19855611 | 1..77 | 96 | -> | Plus |
| arm_2R | 19855676..19855767 | 78..169 | 100 | -> | Plus |
| arm_2R | 19855829..19856031 | 170..372 | 100 | -> | Plus |
| arm_2R | 19856089..19856303 | 373..585 | 99 | | Plus |
