MXO52701.5prime Sequence
549 bp (549 high quality bases) assembled on 2007-04-02
> MXO52701.5prime
CAGTCGACATGGGAAAGTTACTATCAAAAATTTTCGGCAACAAGGAAATG
CGAATTCTCATGCTCGGACTGGACGCGGCTGGAAAAACAACGATTCTGTA
CAAACTGAAACTTGGCCAATCTGTTACAACGATACCCACTGTGGGCTTTA
ATGTGGAAACCGTCACCTATAAGAATGTCAAGTTCAATGTGTGGGACGTC
GGTGGGCAGGATAAGATTCGACCGCTATGGCGACACTATTACACGGGTAC
ACAGGGTCTGATCTTCGTCGTGGATTGTGCGGATCGGGATCGGATAGACG
AGGCGCGCACGGAGCTGCATAGGATAATTAACGATAGGGAGATGCGCGAC
GCCATCATACTGATATTTGCTAACAATTATGATCTCCCTGATGCAATGAA
ACCCCATGAAATCCAGGAAAAACTAGGTTTAACTAGAATAAGAGATCGCA
ATTGGTATGTACAACCATCATGTGCCACATCCGGCGATGGCCTGTCCGAG
GGCCTCATTTGGTTAACGTCGAACCATAAGTTAGCAAGCTTTCTAGACC
MXO52701.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8156-PD | 528 | Arf51F-RD | 1..368 | 9..376 | 1840 | 100 | Plus |
| CG8156-PB | 528 | Arf51F-RB | 1..368 | 9..376 | 1840 | 100 | Plus |
| CG8156-PC | 528 | Arf51F-RC | 1..368 | 9..376 | 1840 | 100 | Plus |
| CG8156-PA | 528 | Arf51F-RA | 1..368 | 9..376 | 1840 | 100 | Plus |
| CG8156-PE | 528 | Arf51F-RE | 1..368 | 9..376 | 1840 | 100 | Plus |
| CG8156-PD | 528 | Arf51F-RD | 373..525 | 381..533 | 740 | 99.3 | Plus |
| CG8156-PB | 528 | Arf51F-RB | 373..525 | 381..533 | 740 | 99.3 | Plus |
| CG8156-PC | 528 | Arf51F-RC | 373..525 | 381..533 | 740 | 99.3 | Plus |
| CG8156-PA | 528 | Arf51F-RA | 373..525 | 381..533 | 740 | 99.3 | Plus |
| CG8156-PE | 528 | Arf51F-RE | 373..525 | 381..533 | 740 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arf51F-RE | 1357 | CG8156-RE | 281..806 | 8..533 | 2570 | 99.2 | Plus |
| Arf51F-RA | 1352 | CG8156-RA | 276..801 | 8..533 | 2570 | 99.2 | Plus |
| Arf51F-RC | 1370 | CG8156-RC | 294..819 | 8..533 | 2570 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15323841..15324147 | 87..393 | 1460 | 98.4 | Plus |
| 2R | 25286936 | 2R | 15324201..15324341 | 393..533 | 705 | 100 | Plus |
| 2R | 25286936 | 2R | 15323483..15323565 | 8..90 | 415 | 100 | Plus |
| 3L | 28110227 | 3L | 22869850..22869953 | 136..33 | 220 | 80.8 | Minus |
| 4 | 1348131 | 4 | 1124442..1124648 | 70..276 | 210 | 73.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:21:24 has no hits.
MXO52701.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:56 Download gff for
MXO52701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8156-PB | 1..528 | 9..536 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:17 Download gff for
MXO52701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RC | 288..819 | 1..533 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:59 Download gff for
MXO52701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RC | 288..819 | 1..533 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:59 Download gff for
MXO52701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15323477..15323565 | 1..90 | 96 | -> | Plus |
| 2R | 15323845..15324147 | 91..393 | 98 | -> | Plus |
| 2R | 15324202..15324341 | 394..533 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:17 Download gff for
MXO52701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11210982..11211070 | 1..90 | 96 | -> | Plus |
| arm_2R | 11211350..11211652 | 91..393 | 98 | -> | Plus |
| arm_2R | 11211707..11211846 | 394..533 | 100 | | Plus |
