MXO52702.5prime Sequence
792 bp (792 high quality bases) assembled on 2007-04-02
> MXO52702.5prime
CAGTCGACATGACGAACATGCGGCCGCCGCAGAAGTCCAAGCTGCTGAAG
GTCGTCATACTGGGCGACGGAGGCGTTGGCAAGTCCGCCCTGCTCACCCG
ATTCGTCGCCAATCGCTACGAGGAGAACAACTTCCACACCATCGGCGTGG
AGTTCATGAACAAGGACATAGTCGTCGACGGGGAGCGCTACACTCTGCAG
ATATGGGACACCGCTGGCCAGGAGCGATTCCGGGCTCTACGCACCCCGTT
CTACAGAGGATCGGACATCTGTCTGCTCTGCTACGCACTCGACGACCGGG
ACAGCTTGAAGGGATTGGGTGTGTGGCGCAATGAGTTCCTCAACTACGCA
GATGTGGACCAGGACAAGTTTCCATTCTTCGTGGTGGGAAATAAGAACGA
CATTCCGGCGCAGAAGCGACAGGTGAGCTCCGACGCAGTGCAGCAGTGGT
GCGCGGAGCAGAAGGTGGCCTGCCACATCGAGACGTCATCGAAGGCGGCA
ACCAATGTGACGGATGCGTTCGTCCTTGGCCTTCGCCAGTGGCGGCACAT
GGAGTGCGTGGCCGAGGCGGAACTGCGCCAGCACGGCGACACCATTGACC
TCACCCGCCCCATTCGCCTGGTGCAGCGGCGCATCTGTTGCACAGGCGGA
GGAGGCGGTGGCGGCGGCGTAGGGCAGGACGCGGATGGCGATGATGCCGC
CATGCACAGTCCGGGCAAGAAAGTGTTCGGCCAGAAGCGCAACGCCAGCA
AGGCGCCAGCCACCAATTATCGGCTAGCAAGCTTTCTAGACC
MXO52702.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9994-PA | 771 | Rab9-RA | 1..768 | 9..776 | 3790 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab9-RA | 1604 | CG9994-RA | 299..1066 | 9..776 | 3810 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19434921..19435303 | 394..776 | 1900 | 99.7 | Plus |
| 2L | 23513712 | 2L | 19434665..19434861 | 199..395 | 970 | 99.5 | Plus |
| 2L | 23513712 | 2L | 19432872..19433063 | 9..200 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:32:16 has no hits.
MXO52702.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:57 Download gff for
MXO52702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9994-PA | 1..771 | 9..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:43 Download gff for
MXO52702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9-RA | 291..1071 | 1..782 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:45 Download gff for
MXO52702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9-RA | 291..1071 | 1..782 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:45 Download gff for
MXO52702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19434667..19434861 | 201..395 | 99 | -> | Plus |
| 2L | 19432864..19433063 | 1..200 | 98 | -> | Plus |
| 2L | 19434923..19435308 | 396..782 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:43 Download gff for
MXO52702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19432864..19433063 | 1..200 | 98 | -> | Plus |
| arm_2L | 19434667..19434861 | 201..395 | 99 | -> | Plus |
| arm_2L | 19434923..19435308 | 396..782 | 98 | | Plus |
