MXO52703.5prime Sequence
816 bp (641 high quality bases) assembled on 2007-04-02
> MXO52703.5prime
CAGTCGACATGGCTCGCCGCTATGATTCCCGCACCACGATCTTCTCGCCG
GAGGGCCGTTTGTACCAGGTGGAGTACGCCATGGAGGCCATCTCGCACGC
CGGAACCTGCCTCGGAATCCTCGCCGAGGACGGCATCCTGTTGGCAGCCG
AGTGCCGCAGCACAAACAAATTGCTGGACAGCGCCATTCCTTCGGAGAAG
ATCTATCGCCTGAACGACAACATGGTCTGCTCGGTGGCTGGCATCACCTC
CGATGCCAATGTGCTGACCTCAGAACTGCGTCTGATTGCCCAGCGTTACC
AGTTCAGCTACGGCGAGGTGATTCCCTGCGAGCAGCTGGTGTCGCACCTC
TGCGACATCAAACAGGCGTACACTCAGTACGGCGGAAAGCGTCCCTTCGG
CGTCTCGCTGCTCTACATGGGATGGGACAACAAGTACGGCTACCAACTGT
ACCAGTCGGATCCCAGCGGCAACTACGGCGGATGGAAGGCCACCTGTATT
GGCAACAACTTCGGTGCCGCGATCTCCATGCTGAAGCAGGAGCTGGCCGA
TAAGGAGAACGTGAAGCTGACGCTGGCGGACGCCAAGGATTTGGCCATCA
AGGTACTGAGCATGACCCTGGACACCACCAAGCTGACCCCGGAGAAGGTC
GAGATGGCCACGCTGCAGCGTGTGGACAATAAGACCGTATACAGTGTCCT
GGAGAAACCCGATGTGGAGAAGCTGATCGAGAAGTACACAAAGGTACAGG
CGGAGGCCGAGGCTGCCAAGAAGGAGAAGCAAGCGAAGCAGCCGACCAAG
GCAAGCTTTCTAGACC
MXO52703.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9327-PA | 795 | Pros29-RA | 1..792 | 9..800 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha3-RA | 973 | CG9327-RA | 92..883 | 9..800 | 3960 | 100 | Plus |
| Prosalpha3T-RA | 889 | CG1736-RA | 50..526 | 24..503 | 395 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20995446..20996028 | 218..800 | 2915 | 100 | Plus |
| 2R | 25286936 | 2R | 20995102..20995308 | 11..217 | 1035 | 100 | Plus |
| 3R | 32079331 | 3R | 31122890..31123119 | 503..274 | 370 | 77.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:29:17 has no hits.
MXO52703.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:57 Download gff for
MXO52703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9327-PA | 1..795 | 9..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:17 Download gff for
MXO52703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3-RA | 87..886 | 1..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:00 Download gff for
MXO52703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3-RA | 87..886 | 1..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:00 Download gff for
MXO52703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20995097..20995308 | 4..217 | 98 | -> | Plus |
| 2R | 20995446..20996031 | 218..804 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:17 Download gff for
MXO52703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16882602..16882813 | 4..217 | 98 | -> | Plus |
| arm_2R | 16882951..16883536 | 218..804 | 99 | | Plus |
