MXO52705.5prime Sequence
922 bp (819 high quality bases) assembled on 2007-04-02
> MXO52705.5prime
CAGTCGACATGGTGCCCATCGGAGCCGTGCACGGCGGCCATCCCGGCGTA
GTGCATCCGCCACAGCAACCACTGCCCACGGCGCCCAGCGGCCCAAACTC
GCTGCAGCCGAACTCGGTGGGCCAGCCGGGGGCCACCACCTCCTCGAACA
GCAGCGCCTCCAACAAGAGCTCGCTATCCGTCAAGCCCAACTACACGCTC
AAGTTCACGCTGGCCGGGCACACCAAGGCGGTGTCGGCGGTCAAGTTCAG
TCCGAATGGCGAGTGGCTGGCCAGCTCCTCCGCTGATAAACTAATCAAAA
TCTGGGGAGCATACGATGGCAAGTTCGAGAAGACCATTTCGGGCCACAAG
CTGGGCATCAGCGATGTGGCCTGGAGCTCATACTCGCGACTCCTCGTGAG
CGGCAGTGATGACAAGACGCTCAAGGTCTGGGAGCTGAGCACCGGGAAGA
GCTTGAAAACTCTGAAGGGCCACAGCAACTATGTGTTCTGCTGCAACTTT
AATCCGCAGTCCAATCTGATCGTCTCCGGCAGCTTCGACGAGAGCGTTCG
CATATGGGATGTGCGCACCGGCAAGTGTCTGAAGACTCTACCCGCCCATT
CCGATCCCGTTTCGGCGGTACATTTCAATCGCGACGGATCGCTGATCGTG
AGCAGCAGCTACGACGGCCTCTGTCGCATATGGGACACGGCCAGTGGACA
GTGCTTGAAAACCCTGATCGACGACGACAATCCGCCCGTCAGCTTTGTAA
AGTTCTCGCCCAATGGCAAGTACATTTTGGCCGCCACGCTGGATAATACG
CTCAAGTTGTGGGACTACTCGAAGGGCAAGTGCCTGAAGACGTATACGGG
TCACAAGAATGAGAAGTACTGCATATTCGCCAACTTCTCGGTGACGGGAG
GAAAGTGGATCGTGAGTGGCAG
MXO52705.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17437-PA | 1086 | wds-RA | 1..914 | 9..922 | 4545 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wds-RB | 1973 | CG17437-RB | 297..1213 | 6..922 | 4570 | 99.9 | Plus |
| wds-RA | 1634 | CG17437-RA | 297..1213 | 6..922 | 4570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2586761..2587386 | 280..905 | 3115 | 99.8 | Plus |
| X | 23542271 | X | 2586276..2586549 | 6..279 | 1370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:46 has no hits.
MXO52705.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:58 Download gff for
MXO52705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17437-PA | 1..914 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:16 Download gff for
MXO52705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 292..1213 | 1..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:51 Download gff for
MXO52705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wds-RA | 292..1213 | 1..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:51 Download gff for
MXO52705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2586271..2586549 | 1..279 | 98 | -> | Plus |
| X | 2586761..2587386 | 280..905 | 99 | -> | Plus |
| X | 2587441..2587457 | 906..922 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:16 Download gff for
MXO52705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2480304..2480582 | 1..279 | 98 | -> | Plus |
| arm_X | 2480794..2481419 | 280..905 | 99 | -> | Plus |
| arm_X | 2481474..2481490 | 906..922 | 100 | | Plus |
