MXO52706.5prime Sequence
922 bp (564 high quality bases) assembled on 2007-04-02
> MXO52706.5prime
CAGTCGACATGGCAAGCATAGTACTTATAGCTTGCTTGGCTATATTGGGA
TTAATTATTACAATCGCTCTTTTTCTGGCTGGAGGATACTTGTGGTGGAG
GCATAAAAGATCACAGTTACAGTTTATTGAACCAAATGAAGATGAGGAAT
CTAGTAGTTATAGTCTTCGGGCTGCTCAGGATATTGTTGACTCTGGTAAT
CCACCTACAAAACCGCAAGTGCCGGTGGCACATGCTATCACGACTCCTCT
CCAAAATAATATTAACAGGAAATTAAATGGATTTTTAAGTCTTAGAACTC
CTTTGATTGGCGGGTCGGGGGCCTCTCAAACAAAACCGCAAATCATTTCT
TCAGTTGGAAATCCTGGAGATGGGACTACGAAAGATTCTGCAAATAAAAG
TATCTCAATGACAGACATGTATTTGGATAGCACCGATCCAAGTGAAAATG
TTGGGCAAATACATTTCTCCTTGGAGTATGATTTCCAAAACACAACATTA
ATTTTGAAAGTTCTTCAAGGAAAAGAGCTTCCAGCAAAAGATTTGAGTGG
TACTTCCGATCCATATGNTTCGTGTAACGCTGTTACCAGATAAAAAGCAT
AGATTGGAAACCAAAATAAAACGGCGAACCCTTAATCCACGATGGAATGA
AACATTTTATTTTGAAGGTTTTCCAATTCAAAAACTTCAATCACGTGTTT
TACACTTACATGTTTTTGATTACGATCGGTTTTCAAGAGATGACTCCATA
GGGGAAGTATTTCTTCCTTTATGTCAGGTTGACTTTGCTGGAAAACAATC
TTTTTGGAAGGCTTTAAAGCCCCCTGCAAAGGATAAATGCGGAGAACTTC
TCTCCTCCCTTTGCTATCACCCGTCGAAACTCATTTTGACTTTTACACTA
ATTAAAGCGAGAAATTTGAAAG
MXO52706.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2381-PB | 984 | Syt7-RB | 1..559 | 9..567 | 2795 | 100 | Plus |
| CG2381-PC | 1251 | Syt7-RC | 1..559 | 9..567 | 2795 | 100 | Plus |
| CG2381-PA | 1251 | Syt7-RA | 1..559 | 9..567 | 2795 | 100 | Plus |
| CG2381-PE | 1251 | Syt7-RE | 1..559 | 9..567 | 2795 | 100 | Plus |
| CG2381-PG | 1251 | Syt7-RG | 1..559 | 9..567 | 2795 | 100 | Plus |
| CG2381-PB | 984 | Syt7-RB | 560..869 | 569..878 | 1550 | 100 | Plus |
| CG2381-PC | 1251 | Syt7-RC | 560..869 | 569..878 | 1550 | 100 | Plus |
| CG2381-PA | 1251 | Syt7-RA | 560..869 | 569..878 | 1550 | 100 | Plus |
| CG2381-PE | 1251 | Syt7-RE | 560..869 | 569..878 | 1550 | 100 | Plus |
| CG2381-PG | 1251 | Syt7-RG | 560..869 | 569..878 | 1550 | 100 | Plus |
| CG2381-PF | 852 | Syt7-RF | 161..470 | 569..878 | 1550 | 100 | Plus |
| CG2381-PF | 852 | Syt7-RF | 1..160 | 408..567 | 800 | 100 | Plus |
| CG2381-PB | 984 | Syt7-RB | 874..913 | 883..922 | 175 | 97.5 | Plus |
| CG2381-PC | 1251 | Syt7-RC | 874..913 | 883..922 | 175 | 97.5 | Plus |
| CG2381-PA | 1251 | Syt7-RA | 874..913 | 883..922 | 175 | 97.5 | Plus |
| CG2381-PE | 1251 | Syt7-RE | 874..913 | 883..922 | 175 | 97.5 | Plus |
| CG2381-PG | 1251 | Syt7-RG | 874..913 | 883..922 | 175 | 97.5 | Plus |
| CG2381-PF | 852 | Syt7-RF | 475..514 | 883..922 | 175 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt7-RI | 2596 | CG2381-RI | 102..1017 | 6..922 | 4500 | 99.6 | Plus |
| Syt7-RM | 2830 | CG2381-RM | 123..1038 | 6..922 | 4500 | 99.6 | Plus |
| Syt7-RA | 2794 | CG2381-RA | 88..1002 | 7..922 | 4495 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 282434..282738 | 698..393 | 1480 | 99.7 | Minus |
| 4 | 1348131 | 4 | 305015..305179 | 170..6 | 825 | 100 | Minus |
| 4 | 1348131 | 4 | 302386..302527 | 310..169 | 710 | 100 | Minus |
| 4 | 1348131 | 4 | 281748..281894 | 922..776 | 660 | 96.6 | Minus |
| 4 | 1348131 | 4 | 281946..282028 | 779..697 | 415 | 100 | Minus |
| 4 | 1348131 | 4 | 302242..302324 | 392..310 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:43 has no hits.
MXO52706.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:59 Download gff for
MXO52706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2381-PG | 1..913 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:44 Download gff for
MXO52706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RI | 99..1017 | 1..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:15 Download gff for
MXO52706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RM | 119..1038 | 1..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:15 Download gff for
MXO52706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 305016..305181 | 1..169 | 98 | | Minus |
| 4 | 281948..282028 | 697..777 | 100 | <- | Minus |
| 4 | 282436..282738 | 393..696 | 99 | <- | Minus |
| 4 | 281748..281892 | 778..922 | 97 | <- | Minus |
| 4 | 302242..302323 | 311..392 | 100 | <- | Minus |
| 4 | 302386..302526 | 170..310 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:44 Download gff for
MXO52706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 303062..303364 | 393..696 | 99 | <- | Minus |
| arm_4 | 322868..322949 | 311..392 | 100 | <- | Minus |
| arm_4 | 323012..323152 | 170..310 | 100 | <- | Minus |
| arm_4 | 302574..302654 | 697..777 | 100 | <- | Minus |
| arm_4 | 325642..325807 | 1..169 | 98 | | Minus |
| arm_4 | 302374..302518 | 778..922 | 97 | <- | Minus |
