MXO52707.5prime Sequence
525 bp (525 high quality bases) assembled on 2007-04-02
> MXO52707.5prime
CAGTCGACATGATGGTTGAGTCCGATGGAACCGCCGACGCCACCCGCCGC
CTAAACGTGAAGAAGCAAACACTGGACGATGCGTACGCCGTGCCCGCCAA
CTTCCTGGAGATCGACGTGGTCAATCCGCTGACCACCATGGCGGCGGGCA
AGAAGCGCTACACGGACTACGAGGTCCGGATGCGGACCAATCTGCCCGTC
TTTAAGGTAAAGGAGTCCAGTGTCAGGCGACGCTACAGCGACTTTGAGTG
GCTGCGAAACGAGCTGGAGCGGGATAGCAAGATTGTGGTGCCACCACTCC
CAGGAAAGGCATGGAAGCGGCAGATGCCCTTCCGCGGCGACGAGGGCATC
TTTGACGAAAGCTTCATCGAGGAGCGGCGCAAGGGACTGGAGGCCTTCAT
CAACAAGATAGCCGGACATCCGCTGGCGCAGAACGAGCGCTGCCTGCATA
TGTTCCTGCAGGAGAATGTCATAGATAAGAACTACGTGCCCGGCAAGATT
CGGAACACAGCAAGCTTTCTAGACC
MXO52707.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6359-PA | 504 | CG6359-RA | 1..501 | 9..509 | 2505 | 100 | Plus |
| CG6359-PB | 333 | CG6359-RB | 1..330 | 180..509 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snx3-RB | 1860 | CG6359-RB | 314..814 | 9..509 | 2505 | 100 | Plus |
| Snx3-RA | 1426 | CG6359-RA | 314..814 | 9..509 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12629220..12629449 | 280..509 | 1150 | 100 | Plus |
| 3R | 32079331 | 3R | 12628344..12628520 | 9..185 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 12628888..12628984 | 185..281 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:07:52 has no hits.
MXO52707.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:00 Download gff for
MXO52707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6359-PA | 1..504 | 9..513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:12 Download gff for
MXO52707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx3-RA | 307..823 | 1..520 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:57 Download gff for
MXO52707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx3-RA | 307..823 | 1..520 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:57 Download gff for
MXO52707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12628337..12628520 | 1..185 | 97 | -> | Plus |
| 3R | 12628889..12628984 | 186..281 | 100 | -> | Plus |
| 3R | 12629222..12629458 | 282..520 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:12 Download gff for
MXO52707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8454059..8454242 | 1..185 | 97 | -> | Plus |
| arm_3R | 8454611..8454706 | 186..281 | 100 | -> | Plus |
| arm_3R | 8454944..8455180 | 282..520 | 97 | | Plus |
