MXO52708.5prime Sequence
894 bp (807 high quality bases) assembled on 2007-04-02
> MXO52708.5prime
CAGTCGACATGGTCAACAACGCCTCGGCGGCGGTCCAGGGTCAGGGTCCC
AGTCAGCAGAAGGCGGGTGCCACGCCCCTGGGCGTGGGCAGTCGTTCCGG
ACGGAGTTACCTGGAGCGAATGGCCTCGGCGCCGCTACTCACCAATCAGC
CCAAATCCTGTCTCAGCCGCAAATCCTGCCTGCACAAATCCCAGAACACT
ACAGCCAGTTCCGCAGATCTCTCGCCGACGGACACCGATGTCGCGGACAG
TGCCAGTCATAGCTGTATCTGCAGCAAGGATAGTGACAGCAACGGCGAAG
TGAGCCGTGGCCCCAAAAAGCATGTGATCTTCGCTGATGATGAGGGTCTA
TCGCTAACCGAGGTTCGTGTGATGTCCGAACCCTCGAATGTGCCGCCATA
TTGGAGCATGAAGTTTCTGGAGCAAATTACACAGGGCCTGGTCAGCCCAC
ATCCTCCGGATCAGTGGACAGTGGACTTCAAGCAGCCAGCCTCAGACTAT
CTATCATTTAGACAAAAGATAGAACGCGACTTTGTTTCCTTGGAGAATGT
GATCGTCAAGGATGAAGGAATCGATTGTCGTGGGCACCATCAAGGTGAAG
AATATCGACTTCCAGAAGGAGATCATTGTCCGTGTGACCCTGGATGATTG
AAAGAGCAGCANGATATCTTCTGTACATACGCCAGGGCCTATGGACCGGC
TACTTGTGCTCATGTAGTCTTCGATACATTCTCCTTCAAAATCACCTTGC
CGCCATCCTCCAAGCGCCTGGAATTCTGCATCTGCTATCGCACCAACGAA
ACAGAATATTGGGATAATAATGATGGTAAAAACTACACCATTAGCAAGCG
ATCGCCCTTTTATTTACACGCCTTGTCGCCCTATGATAAGGGTC
MXO52708.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9238-PB | 1155 | CG9238-RB | 162..719 | 8..565 | 2790 | 100 | Plus |
| CG9238-PA | 993 | CG9238-RA | 1..557 | 9..565 | 2785 | 100 | Plus |
| CG9238-PB | 1155 | CG9238-RB | 811..1018 | 657..864 | 1021 | 99.5 | Plus |
| CG9238-PA | 993 | CG9238-RA | 649..856 | 657..864 | 1021 | 99.5 | Plus |
| CG9238-PB | 1155 | CG9238-RB | 719..810 | 566..657 | 385 | 96.7 | Plus |
| CG9238-PA | 993 | CG9238-RA | 557..648 | 566..657 | 385 | 96.7 | Plus |
| CG9238-PB | 1155 | CG9238-RB | 1022..1048 | 868..894 | 135 | 100 | Plus |
| CG9238-PA | 993 | CG9238-RA | 860..886 | 868..894 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gbs-70E-RC | 2846 | CG9238-RC | 671..1557 | 8..894 | 4289 | 99.1 | Plus |
| Gbs-70E-RB | 2737 | CG9238-RB | 671..1557 | 8..894 | 4289 | 99.1 | Plus |
| Gbs-70E-RA | 2084 | CG9238-RA | 509..1395 | 8..894 | 4289 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14547117..14547413 | 304..8 | 1485 | 100 | Minus |
| 3L | 28110227 | 3L | 14542354..14542669 | 825..510 | 1429 | 98.1 | Minus |
| 3L | 28110227 | 3L | 14542733..14542941 | 511..303 | 1045 | 100 | Minus |
| 3L | 28110227 | 3L | 14542226..14542295 | 894..825 | 305 | 95.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:39:39 has no hits.
MXO52708.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:01 Download gff for
MXO52708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9238-PB | 156..1048 | 1..894 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:01 Download gff for
MXO52708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9238-RA | 503..1395 | 1..894 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:00 Download gff for
MXO52708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gbs-70E-RA | 503..1395 | 1..894 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:00 Download gff for
MXO52708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14542226..14542295 | 825..894 | 97 | <- | Minus |
| 3L | 14542355..14542667 | 512..824 | 98 | <- | Minus |
| 3L | 14542733..14542939 | 305..511 | 100 | <- | Minus |
| 3L | 14547117..14547416 | 1..304 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:01 Download gff for
MXO52708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14540217..14540516 | 1..304 | 98 | | Minus |
| arm_3L | 14535326..14535395 | 825..894 | 97 | <- | Minus |
| arm_3L | 14535455..14535767 | 512..824 | 98 | <- | Minus |
| arm_3L | 14535833..14536039 | 305..511 | 100 | <- | Minus |
