MXO52710.5prime Sequence
363 bp (363 high quality bases) assembled on 2007-04-02
> MXO52710.5prime
CAGTCGACATGGCTGATGATCCAGAAAACTCAGTGGATAGGCCCACAGAC
GACGGAGATGCCGGCAAACCGGAAAAAATGTTTACGCTGAAGAAATGGAA
CGCAGTTGCAATGTGGAGTTGGGATGTGGAATGCGATATCTGTGCCATTT
GCCGTGTTCAAGTTATGGATTCCTGCCTTCGCTGCCAGGCGGACAACAAG
CGGGATGTGATGGGTCGCCAGGACTGCGTGGTGGTTTGGGGCGAGTGCAA
CCACTCCTTTCACCACTGCTGCATGTCGCTGTGGGTCAAGCAGAACAACC
GATGCCCGTTGTGCCAGCAGGAGTGGTCCATTCAGCGCATGGGAAAAGCA
AGCTTTCTAGACC
MXO52710.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8998-PA | 342 | Roc2-RA | 1..339 | 9..347 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roc2-RB | 758 | CG8998-RB | 268..609 | 6..347 | 1710 | 100 | Plus |
| Roc2-RA | 584 | CG8998-RA | 172..513 | 6..347 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11652905..11653084 | 347..168 | 900 | 100 | Minus |
| 2R | 25286936 | 2R | 11678206..11678368 | 168..6 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:53 has no hits.
MXO52710.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:01 Download gff for
MXO52710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8998-PA | 1..342 | 9..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:49 Download gff for
MXO52710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 167..516 | 1..351 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:19 Download gff for
MXO52710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 167..516 | 1..351 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:19 Download gff for
MXO52710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11652901..11653083 | 169..351 | 98 | <- | Minus |
| 2R | 11678206..11678369 | 1..168 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:49 Download gff for
MXO52710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7565711..7565874 | 1..168 | 97 | | Minus |
| arm_2R | 7540406..7540588 | 169..351 | 98 | <- | Minus |
