MXO52712.5prime Sequence
929 bp (803 high quality bases) assembled on 2007-04-02
> MXO52712.5prime
CAGTCGACATGGAGCAAATGGAAGTGGACGTTGACATGTCGGCCAAGCCC
AGCACATCGTCCTCCGCCGCCGCCGGGAGCAGTATGGCAGTGGATAAGAC
TGCGGATCAAAACCCACAGCCGCAGGGAAACATAATGGCTGCAGCGGGCA
CCAGTGGTTCTGTGACCATATCGCTGCATCCGCTGGTCATAATGAACATC
TCCGAGCACTGGACACGCTTTCGTGCACAGCACGGTGAGCCGCGACAGGT
GTACGGAGCACTGATTGGCAAGCAGAAGGGCCGCAACATTGAGATTATGA
ACTCGTTCGAACTGAAGACGGACGTTATTGGCGATGAAACAGTGATCAAC
AAGGACTACTACAACAAGAAGGAACAACAGTACAAGCAGGTGTTCAGTGA
TCTCGACTTCATAGGCTGGTACACAACCGGCGACAATCCCACTGCCGATG
ACATTAAGATCCAAAGACAGATAGCCGCCATCAACGAGTGCCCCATCATG
CTACAGCTGAATCCGCTCTCCCGCAGCGTCGACCACCTTCCCCTGAAGCT
ATTCGAGTCCCTAATCGATCTGGTGGACGGCGAGGCCACCATGCTGTTCG
TGCCCCTCACCTACACACTGGCCACCGAGGAGGCGGAGCGCATTGGTGTG
GATCATGTGGCGCGCATGACCTCGAACGAGTCCGGCGAGAAGAGCGTGGT
GGCGGAGCATTTGGTGGCCCAGGACAGTGCCATTAAGATGCTAAATACAC
GCATCAAGATCGTGCTGCAGTACATACGCGATGTGGAGGCCGGAAAGCTG
CGGGCCAACCAAGAGATTCTGCGAGAAGCCTACGCTCTCTGCCACCGACT
GCCCGTCATGCAGGTGCCCGCCTTCAAGGAGGAATTCTACACGCAGGGCA
ACGATGTGAGACTGATTAGCTACCTGGGG
MXO52712.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6932-PA | 1026 | CSN6-RA | 1..920 | 9..928 | 4525 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN6-RA | 1203 | CG6932-RA | 122..1042 | 8..928 | 4560 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22581331..22581872 | 387..928 | 2665 | 99.4 | Plus |
| 3R | 32079331 | 3R | 22580894..22581278 | 8..392 | 1925 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:01 has no hits.
MXO52712.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:02 Download gff for
MXO52712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6932-PA | 1..920 | 9..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:03 Download gff for
MXO52712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN6-RA | 115..1042 | 1..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:59 Download gff for
MXO52712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN6-RA | 115..1042 | 1..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:59 Download gff for
MXO52712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22580887..22581275 | 1..389 | 98 | -> | Plus |
| 3R | 22581334..22581872 | 390..929 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:03 Download gff for
MXO52712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18406609..18406997 | 1..389 | 98 | -> | Plus |
| arm_3R | 18407056..18407594 | 390..929 | 99 | | Plus |
