MXO52713.5prime Sequence
873 bp (801 high quality bases) assembled on 2007-04-02
> MXO52713.5prime
CAGTCGACATGTCGCATCTCCGGGGTTTGGGGCGACTGCTGATCGCCGTG
ACCTTCTTCACATGCGGATTCTTCGTCAACATTGGCCAGCTCCTGCTGAT
TCTCCTCGTGAGGCCCTTCGATAAGAAGCTATCCCGCAGTCTGGCCTACT
ACCTGCACTACTCCTTCTATTGCATCCTTGTCTGTGTGGCGGAATGGTAT
GCGGGCAGCAAGCTGAGGGTGTACATCGATCCCCAGGACGAGCAGAAGTT
CTTCGGCAAGGAGCATGGACTGCTCCTGATGAACCACACGTACGAGATCG
ACTGGCTGACCGCCTGGATGATCACCGACAAGCTGGGCAATCTGGGAGGC
ACCAAGGCGTATGCCAAGAAGATGCTGCGCTATGTTCCGGTCCTGGGATG
GGTCTGGTGGATGGCCGAGTTCATCTTCCTTGACCGCAACTTCGAGAAGG
ACAAGGTGGTGATCAAGACGCAGCTGAAGGAGGTCTTCTCCTATCCGGAT
CCCGTGTGGCTACTGCTGAACGCGGAGGGCACCCGTTTCACACCCGCCAA
ACACGAGCTGTCAGTCAAGTTCGCCGAGGAGCGAGGTCTTCCCCTCCTCA
AGCACCATCTGATTCCGCGCACTAAGGGATTCACGACCAGTCTGCCCACC
ATGCGTGGCATCTGTCCTGCCATCTACGACATCAATCTGGCCTTCAAGAA
GAATGCCGAGCCAAAGCCCACCATGCTGTCCCAGTTGAACGGAGAGCCCG
TGGAACCGTACATGTACATTCGCCGAGTGCCACTGGACGTGGTTCCCGAT
GACGAGAAGGAGGCCGCCGCCTGNATGCAGGACTTCTTTGCGGAAAAGGA
CAAGATCATCGACAGCTTCCACG
MXO52713.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4753-PB | 1143 | CG4753-RB | 1..865 | 9..873 | 4306 | 99.8 | Plus |
| CG4753-PA | 1143 | CG4753-RA | 1..865 | 9..873 | 4306 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4753-RC | 1575 | CG4753-RC | 280..1144 | 9..873 | 4314 | 99.9 | Plus |
| CG4753-RA | 1355 | CG4753-RA | 60..924 | 9..873 | 4314 | 99.9 | Plus |
| CG4753-RB | 1570 | CG4753-RB | 275..1139 | 9..873 | 4314 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16379700..16380235 | 710..175 | 2680 | 100 | Minus |
| 3L | 28110227 | 3L | 16380471..16380636 | 174..9 | 830 | 100 | Minus |
| 3L | 28110227 | 3L | 16379465..16379629 | 873..709 | 814 | 99.4 | Minus |
| 3L | 28110227 | 3L | 16383353..16383787 | 688..254 | 540 | 74.9 | Minus |
| 3L | 28110227 | 3L | 16382580..16382670 | 870..780 | 219 | 82.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:32:22 has no hits.
MXO52713.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:02 Download gff for
MXO52713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4753-PA | 1..865 | 9..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:47 Download gff for
MXO52713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4753-RB | 271..1139 | 1..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:52 Download gff for
MXO52713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4753-RB | 271..1139 | 1..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:52 Download gff for
MXO52713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16379465..16379627 | 711..873 | 99 | <- | Minus |
| 3L | 16379700..16380235 | 175..710 | 100 | <- | Minus |
| 3L | 16380471..16380636 | 9..174 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:47 Download gff for
MXO52713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16372565..16372727 | 711..873 | 99 | <- | Minus |
| arm_3L | 16372800..16373335 | 175..710 | 100 | <- | Minus |
| arm_3L | 16373571..16373736 | 9..174 | 100 | | Minus |
