MXO52714.5prime Sequence
626 bp (623 high quality bases) assembled on 2007-04-02
> MXO52714.5prime
CAGTCGACATGGGTTTGTGCAAGTGCCCCAAGCGCCTGGTGACCAACCAG
TTTTGCTTTGAGCATCGAGTCAATGTTTGCGAACACTGTATGGTTCAGTC
TCATCCAAAGTGCATTGTGCAGTCGTATCTGCAGTGGCTGCGGGACAGCG
ACTACATCTCCAACTGCACTCTGTGCGGCACCACATTGGAGCAGGGCGAT
TGCGTGCGCCTCGTCTGCTACCATGTTTTCCACTGGGACTGCCTGAACGC
CCGCCAAGCCGCACTGCCTGCCAACACAGCCCCTCGGGGTCACCAGTGCC
CCGCCTGCAGTGTGGAGATCTTTCCCAACGCCAACCTGGTCTCCCCGGTG
GCCGATGCTCTGAAGAGTTTCCTGTCTCAGGTTAACTGGGGCAGAAATGG
CCTGGGACTCGCCCTGCTCTCTGAGGAGCAGAGCAGCAGTCTGAAGGCCA
TTAAGCCCAAGGTGGCAAGCCAGGCGGCTGTCAGCAACATGACCAAAGTG
CACCACATCCATTCCGGTGGCGAGCGAGAGCGCACGAAGCCCAATGGCCA
TGACGCCGTGAGCCCACATTCCGTGCTCCTAATGGATGCATTTAATCCCC
CAAGTGCGGGCGACTACGCCAGCAGC
MXO52714.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5382-PB | 900 | CG5382-RB | 1..618 | 9..626 | 3065 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5382-RB | 1165 | CG5382-RB | 171..788 | 9..626 | 3075 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22365019..22365225 | 618..412 | 1020 | 99.5 | Minus |
| 3R | 32079331 | 3R | 22365276..22365469 | 416..223 | 955 | 99.5 | Minus |
| 3R | 32079331 | 3R | 22365537..22365650 | 222..109 | 570 | 100 | Minus |
| 3R | 32079331 | 3R | 22365712..22365813 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:11:09 has no hits.
MXO52714.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:02 Download gff for
MXO52714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5382-PB | 1..618 | 9..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:08 Download gff for
MXO52714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5382-RB | 165..788 | 1..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:04 Download gff for
MXO52714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5382-RB | 165..788 | 1..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:04 Download gff for
MXO52714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22365537..22365648 | 111..222 | 100 | <- | Minus |
| 3R | 22365712..22365818 | 1..110 | 96 | | Minus |
| 3R | 22365013..22365220 | 417..626 | 98 | <- | Minus |
| 3R | 22365276..22365469 | 223..416 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:08 Download gff for
MXO52714.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18190735..18190942 | 417..626 | 98 | <- | Minus |
| arm_3R | 18190998..18191191 | 223..416 | 99 | <- | Minus |
| arm_3R | 18191259..18191370 | 111..222 | 100 | <- | Minus |
| arm_3R | 18191434..18191540 | 1..110 | 96 | | Minus |
