MXO52716.5prime Sequence
822 bp (821 high quality bases) assembled on 2007-04-02
> MXO52716.5prime
CAGTCGACATGGAGTACCTCTACAACGCTAGTATGCATTGCGAAGATGAA
GAACGCGTCAATTTCTACAACATGGACAAGTTCTTCGTGCCCCACGTGCA
GTCGATTGAGCTGGAGCAGCAGGCGATCCTGCGGCAATACGTGCCCCAGT
ACGCTTATCAGTGGCCCTGGGGATTTGCCCCTTCCGCTTACAGTTATTAC
CAGGGATTCGGTAGCCTTAATATGATGACTATGGACATTACCAAAACCGA
ACCCGGTCTCGTCGGGCTTTCCTCCAACCAACAGCAGCAGCAGCAGCAGC
AGTCGCAGCAAAGCAACGCCGGCATGAACAGCGGTGGCCAGAACAACGGG
CCCAATCCCAATGGCAATGGGAACGTGGTCAATGTGGTCAACTCCGGCGG
TGCCGGTGGCGGCAACAATGGCAACGGGAATGTCCAGAGCATCGCCGCCG
CTGCCAACAATAATAACAATAACAACAACAACGGCAGCCAATTGTGCGCC
GGCTGCGGCAAGCACATCCAGGACCGCTATCTCCTCCGCGCCCTGGACAT
GCTGTGGCACGAGGACTGCCTCAAGTGCGGCTGCTGCGACTGCCGCCTGN
GCGAGGTGGGCTCCACGCTCTACACCAAGGGCAACCTGATGCTCTGCAAG
CGGGACTACTTGAGATTGTTTGGCAACACGGGCTACTGCGCCGCCTGCAG
CAAGGTGATCCCAGCCTTCGAGATGGTGATGCGTGCAAGGACCAATGTCT
ATCACTTGGAGTGCTTCGCTTGTCAGCAGTGTAACCACAGATTCTGTGTG
GGCGACCGTTTCTACCTGTGCG
MXO52716.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6500-PB | 1155 | Bx-RB | 1..814 | 9..822 | 4051 | 99.8 | Plus |
| CG6500-PA | 942 | Bx-RA | 1..601 | 222..822 | 2986 | 99.8 | Plus |
| CG6500-PC | 942 | Bx-RC | 1..601 | 222..822 | 2986 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bx-RB | 2051 | CG44425-RB | 102..920 | 4..822 | 4069 | 99.8 | Plus |
| Bx-RD | 2494 | CG44425-RD | 761..1363 | 220..822 | 3004 | 99.8 | Plus |
| Bx-RC | 3413 | CG44425-RC | 597..1199 | 220..822 | 3004 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18566696..18567138 | 222..664 | 2204 | 99.8 | Plus |
| X | 23542271 | X | 18566407..18566624 | 4..221 | 1075 | 99.5 | Plus |
| X | 23542271 | X | 18567509..18567636 | 663..790 | 640 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 2731..2802 | 420..491 | 125 | 67.1 | Plus |
| Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3132..3208 | 405..484 | 122 | 65 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2627..2663 | 451..487 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2430 | 389..482 | 112 | 59.6 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2649..2684 | 455..490 | 108 | 77.8 | Plus |
MXO52716.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:03 Download gff for
MXO52716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6500-PB | 1..814 | 9..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:53 Download gff for
MXO52716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx-RB | 100..920 | 1..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:58 Download gff for
MXO52716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx-RB | 100..920 | 1..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:58 Download gff for
MXO52716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18566405..18566624 | 1..221 | 99 | -> | Plus |
| X | 18566696..18567138 | 222..664 | 99 | -> | Plus |
| X | 18567511..18567636 | 665..790 | 100 | -> | Plus |
| X | 18570564..18570595 | 791..822 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:53 Download gff for
MXO52716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18460438..18460657 | 1..221 | 99 | -> | Plus |
| arm_X | 18460729..18461171 | 222..664 | 99 | -> | Plus |
| arm_X | 18461544..18461669 | 665..790 | 100 | -> | Plus |
| arm_X | 18464597..18464628 | 791..822 | 100 | | Plus |
