MXO52717.5prime Sequence
720 bp (720 high quality bases) assembled on 2007-04-02
> MXO52717.5prime
CAGTCGACATGTCTTCAACCCCAGCAGCGGGCAGTGCCGCCGAGGTGGCC
ACCTCCAGTGCCACCTCAAATGCGCCCAGTGCACCCAGCACAACGGCCAG
CAACGTGAGCAATACCAGCCAGCCGACGACTGCCGGAACTCCGCAGGCAC
GTGGCGGCAGGGGCAGCAACGCCAACGGTGGTGCCTCCGGGAGCAATGCC
GGTGGCGGAGATGAGCCGCGAAAGGAAGCCAAAACAACGCCCAGGATATC
CAGGGCGCTGGGCACCTCGGCCAAGCGCATACAGAAGGAGCTGGCTGAGA
TCACACTGGATCCACCGCCCAACTGCAGTGCCGGGCCCAAGGGCGACAAC
CTGTACGAGTGGGTATCCACCATACTGGGACCACCCGGATCCGTCTACGA
GGGCGGCGTCTTCTTCCTCGACATACACTTCTCGCCGGAGTATCCCTTCA
AGCCACCCAAAGTCACGTTCCGCACGCGCATCTATCACTGCAACATCAAC
AGCCAGGGCGTCATTTGCCTGGACATACTCAAGGACAACTGGTCGCCGGC
GCTGACCATATCAAAGGTCTTGCTGTCAATTTGCTCCCTGCTCACAGACT
GTAATCCAGCCGATCCGCTGGTGGGCAGCATTGCCACGCAATATTTGCAG
AATCGTGAGGAGCACGATCGAATTGCGCGTCTCTGGACAAAAAGGTACGC
AACAGCAAGCTTTCTAGACC
MXO52717.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6720-PA | 699 | UbcD2-RA | 1..696 | 9..704 | 3455 | 99.8 | Plus |
| CG6720-PB | 699 | UbcD2-RB | 1..696 | 9..704 | 3455 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc2-RD | 1625 | CG6720-RD | 372..1067 | 9..704 | 3465 | 99.9 | Plus |
| Ubc2-RC | 2111 | CG6720-RC | 305..1000 | 9..704 | 3465 | 99.9 | Plus |
| Ubc2-RB | 1349 | CG6720-RB | 96..791 | 9..704 | 3465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10766391..10766991 | 609..9 | 2990 | 99.8 | Minus |
| 2L | 23513712 | 2L | 1334347..1334718 | 282..653 | 495 | 75.5 | Plus |
| 2L | 23513712 | 2L | 10766189..10766278 | 696..607 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:01:18 has no hits.
MXO52717.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:03 Download gff for
MXO52717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6720-PB | 1..699 | 9..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:56 Download gff for
MXO52717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UbcD2-RA | 305..1006 | 9..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:33 Download gff for
MXO52717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc2-RB | 96..797 | 9..710 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:33 Download gff for
MXO52717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10766189..10766275 | 610..696 | 100 | <- | Minus |
| 2L | 10766391..10766991 | 9..609 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:56 Download gff for
MXO52717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10766189..10766275 | 610..696 | 100 | <- | Minus |
| arm_2L | 10766391..10766991 | 9..609 | 99 | | Minus |
