MXO52718.5prime Sequence
534 bp (534 high quality bases) assembled on 2007-04-02
> MXO52718.5prime
CAGTCGACATGGGTAACGAGACCTCCCTGCCCATGGACATGTGTTCCAAC
TTCGATGCGGACGAGATCCGTAGGCTGGGCAAGCGATTCCGCAAGCTGGA
TCTGGACAACTCGGGTGCGCTGAGCATAGATGAGTTCATGTCGCTGCCGG
AATTGCAGCAGAATCCGCTGGTGCAGCGGGTTATCGATATCTTCGATGCG
GATGGAAACGGGGAGGTGGACTTCAAGGAGTTTATCCAGGGAGTGTCGCA
GTTTAGCGTGCGCGGCGATAAGCTGTCCAAGCTGCGATTCGCCTTCCGCA
TCTATGATATGGACAATGATGGCTACATCTCGAACGGGGAACTCTTCCAG
GTGCTCAAGATGATGGTGGGCAACAATCTGAAGGACACACAGCTGCAGCA
GATCGTGGACAAGACCATTTGCTTTGCGGACAAGGACGAGGATGGCAAGA
TATCGTTCGATGAATTCTGCTCGGTGGTGGGCAATACCGATATTCACAAG
AAAATGGTTGTCGATGTTGCAAGCTTTCTAGACC
MXO52718.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4209-PA | 513 | CanB-RA | 1..510 | 9..518 | 2550 | 100 | Plus |
| CG11217-PA | 513 | CanB2-RA | 19..251 | 27..259 | 415 | 87.1 | Plus |
| CG11217-PA | 513 | CanB2-RA | 418..509 | 426..517 | 185 | 88 | Plus |
| CG11217-PA | 513 | CanB2-RA | 349..407 | 357..415 | 170 | 91.5 | Plus |
| CG11217-PA | 513 | CanB2-RA | 256..320 | 264..328 | 150 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanB-RB | 1148 | CG4209-RB | 103..613 | 8..518 | 2555 | 100 | Plus |
| CanB-RA | 1214 | CG4209-RA | 169..679 | 8..518 | 2555 | 100 | Plus |
| CanB2-RB | 2061 | CG11217-RB | 257..765 | 9..517 | 1405 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5333404..5333914 | 8..518 | 2555 | 100 | Plus |
| 2R | 25286936 | 2R | 7787234..7787533 | 52..351 | 825 | 85 | Plus |
| 2R | 25286936 | 2R | 7787597..7787757 | 357..517 | 490 | 87 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:55 has no hits.
MXO52718.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:03 Download gff for
MXO52718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4209-PA | 1..513 | 9..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:22 Download gff for
MXO52718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanB-RA | 161..685 | 1..526 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:47 Download gff for
MXO52718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanB-RA | 161..685 | 1..526 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:47 Download gff for
MXO52718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5333396..5333920 | 1..526 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:22 Download gff for
MXO52718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5227429..5227953 | 1..526 | 98 | | Plus |
