MXO52720.5prime Sequence
921 bp (783 high quality bases) assembled on 2007-04-02
> MXO52720.5prime
CAGTCGACATGGAGCCTTATGATGTCGTCGTCAACCAGCCCGTCGTCATA
GATAACGGCTCCGGTGTGATCAAAGCCGGCTTTGCTGGTGAGCACATTCC
AAAATGCAGGTTTCCCAATTACATTGGCCGGCCCAAGCATGTCCGAGTGA
TGGCTGGTGCGCTGGAGGGCGACATATTCGTTGGACCCAAGGCGGAGGAG
CACCGTGGCCTGCTTAGCATCCGGTACCCCATGGAGCACGGCATTGTCAC
CGACTGGAATGACATGGAGCGGATATGGAGCTACATTTACAGCAAAGAAC
AACTGGCCACCTTCACGGAGGATCATCCCGTGCTGCTGACCGAGGCCCCG
CTTAATCCGCGCCGAAACCGCGAAAAGGCAGCCGACTTCTTCTTTGAAGG
CATCAATGCACCTGCGCTCTTTGTGTCCATGCAGGCGGTGCTCAGTCTCT
ACGCCACCGGTCGTGTGACTGGCGTAGTGCTCGACTCCGGCGACGGTGTG
ACGCATGCGGTTCCTATCTACGAGGGATTCGCCATGCCTCACAGTATTAT
GCGCGTGGACATCGCCGGGCGCGATGTGACGCGCTACCTGAAGACACTCA
TCCGCCGGGAGGGCTTTAACTTCCGGTCGACTGCCGAATTTGAGATTGTG
CGCTCCATCAAGGAGAAGGTCTGCTATCTGGCCACCAATCCGCAGAAGGA
GGAGACCGTGGAAACCGAGAAGTTTGCCTACAAGCTGCCCGACGGCAAGA
TCTTTGAGATTGGACCTGCACGCTTCAGGGCGCCGGAGGTGCTCTTCCGG
CCCGATCTGCTGGGCGAGGAATGTGAGGGCATTCACGACGTTCTGATGTA
CTCCATCGAGAAGTCAGATATGGATCTCAGGAAAATGCTCTACCAGAACA
TCGTGCTGTCCGGCGGATCAA
MXO52720.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6174-PA | 1131 | Arp87C-RA | 1..913 | 9..921 | 4540 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp1-RA | 1469 | CG6174-RA | 80..992 | 9..921 | 4550 | 99.9 | Plus |
| CG31347-RA | 865 | CG31347-RA | 728..776 | 57..9 | 245 | 100 | Minus |
| Act87E-RC | 1853 | CG18290-RC | 464..652 | 403..591 | 180 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12693215..12693687 | 449..921 | 2365 | 100 | Plus |
| 3R | 32079331 | 3R | 12692770..12692945 | 122..297 | 880 | 100 | Plus |
| 3R | 32079331 | 3R | 12693004..12693155 | 297..448 | 745 | 99.3 | Plus |
| 3R | 32079331 | 3R | 12692643..12692707 | 57..121 | 325 | 100 | Plus |
| 3R | 32079331 | 3R | 12691822..12691870 | 9..57 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:52:03 has no hits.
MXO52720.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:04 Download gff for
MXO52720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6174-PA | 1..911 | 9..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:54 Download gff for
MXO52720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp1-RA | 74..990 | 1..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:23 Download gff for
MXO52720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp1-RA | 74..990 | 1..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:23 Download gff for
MXO52720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12693215..12693685 | 449..919 | 100 | | Plus |
| 3R | 12691816..12691869 | 1..56 | 92 | -> | Plus |
| 3R | 12692643..12692707 | 57..121 | 100 | -> | Plus |
| 3R | 12692770..12692944 | 122..296 | 100 | -> | Plus |
| 3R | 12693004..12693155 | 297..448 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:54 Download gff for
MXO52720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8517538..8517591 | 1..56 | 92 | -> | Plus |
| arm_3R | 8518365..8518429 | 57..121 | 100 | -> | Plus |
| arm_3R | 8518492..8518666 | 122..296 | 100 | -> | Plus |
| arm_3R | 8518726..8518877 | 297..448 | 99 | -> | Plus |
| arm_3R | 8518937..8519407 | 449..919 | 100 | | Plus |
