MXO52723.5prime Sequence
678 bp (678 high quality bases) assembled on 2007-04-02
> MXO52723.5prime
CAGTCGACATGCCGATACTATATAGTGTGATATCGCGGGGCACCACAGTG
CTGGCGAAGTTTGCGGAGTGCGTCGGCAACTTTGCCGAAGTGACGGAGCA
CATAATCGGACGGATCGGGGTGCATAACCACAAGATGACCTACACACACG
GAGACTACCTGATCCACTACACCTGCGAGAACAAACTGGTCTACATGTGC
ATCACCGACAACGAGTTCGAACGGTCGCGGGCCTTCCTCTTCTTGGCGGA
TATCAAGCAGAAGTTTATCCAGACTTACGGCCTACAGGTGGCCACCGCCA
TCGCCTACTCCATGAACACCGAGTTCTCCAAGATCCTGGCCCAGCAGATG
GTCTATTTCAGTCAGTCCCGGGAGGTGGACACCATTTCGCGAGTACATGG
TCAGATTGACGAGCTTAAAGACATTATGGTTAAGAATATTGACAGCTTGC
GGGATCGCGGCGAGAAACTAGAGCTGCTCGTCAACAAGACCGAAAACTTG
AGCAATAATTCCGTTGCATTCCGTAAGGCCTCCCGAAATTTGGCTCGTCA
AATGTTTTGGAAGAACATCCGCGTCTACGTGGTGGTGGGTCTGGTGATAA
CCTTCATCGTTTACGTGATTGTGAGCATGGCCTGTGGTGGCCTCGCTTGG
CAGTCCTGTGTTGCAAGCTTTCTAGACC
MXO52723.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:12:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1599-PA | 657 | CG1599-RA | 1..654 | 9..662 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vamp7-RC | 1148 | CG1599-RC | 377..1031 | 8..662 | 3275 | 100 | Plus |
| Vamp7-RA | 1090 | CG1599-RA | 319..973 | 8..662 | 3275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9841540..9841768 | 441..213 | 1145 | 100 | Minus |
| 2R | 25286936 | 2R | 9841846..9842051 | 213..8 | 1030 | 100 | Minus |
| 2R | 25286936 | 2R | 9841197..9841349 | 662..510 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 9841408..9841476 | 509..441 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:29:24 has no hits.
MXO52723.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:05 Download gff for
MXO52723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1599-PA | 1..657 | 9..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:22 Download gff for
MXO52723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vamp7-RA | 310..986 | 1..671 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:06 Download gff for
MXO52723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vamp7-RA | 310..986 | 1..671 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:06 Download gff for
MXO52723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9841184..9841349 | 510..671 | 97 | <- | Minus |
| 2R | 9841408..9841475 | 442..509 | 100 | <- | Minus |
| 2R | 9841540..9841768 | 213..441 | 100 | <- | Minus |
| 2R | 9841847..9842054 | 1..212 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:22 Download gff for
MXO52723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5728689..5728854 | 510..671 | 97 | <- | Minus |
| arm_2R | 5728913..5728980 | 442..509 | 100 | <- | Minus |
| arm_2R | 5729045..5729273 | 213..441 | 100 | <- | Minus |
| arm_2R | 5729352..5729559 | 1..212 | 98 | | Minus |
