MXO52726.5prime Sequence
843 bp (739 high quality bases) assembled on 2007-04-02
> MXO52726.5prime
CAGTCGACATGTCCGGCTCCGGTCTCGACGAGAATCCCTTCGGGGAGCCC
AATCTGGACAATCCGTTTGCGGACCCCGCCATCCAGCAGGCACGACGACT
CCAGAGCGGCGCCGCCCTTGTCTCTCTTGAGGATTACAATCCATTCGAGG
AGCAGGCCAAGCCGCAGCTGCAGATCAACTCAACGAACACGGCGGCGGTG
GTCCAGCCGCTATCGCAGAACATTCCGCCCCCGCAGACCAGTTCCCTGGG
CGCCTCGGCGCCTAGCACCAGCATACAGATCACCTCGGAGGAGCTGCAGC
GCCGGCAGGAGGAGTTGGACCGCAAGGCCGCCGAACTGGACCGCCGCGAG
CAGCAGCTACAGGGCAATGTGCCGCAGCTGAACAACTGGCCACCGCTGCC
GGATAACTTTTGTGTAAAGCCGTGCTTCTACCAGGACTTCGAGGTGGAGA
TACCGCCCGAGTTCCAGAAACTGGTCAAGCGATTGTATTACATTTGGATT
TTTTACACCATGACGTTGTTGGCCAACGTGATAGGCGGTCTAATTTTGCT
GTTCCACGCTGGCGAATTCGAGACCTTCTTCCTGGCCATCTTCTACACGA
TGCTCTTCTCGCCCGCCTCCTATGTCTGCTGGTTCCGACCGGCGTACAAG
GCATTCCGCAACGATTCGAGCTTCAACTTCATGGTCTTCTTCTTCATCTA
CTTCTTTCAAACGCTGTACTCGATTGTGCAGGCGGTGGGCTTNCACAAGA
TGGGCTACTGTGGCTTTATTACGGCCATCGGGCAGTTCGATGGGCAAGCG
TCGGGTATTATCGTCGGCATTCTGCTGTTGAACGTGGCATTCT
MXO52726.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9195-PA | 1032 | Scamp-RA | 1..835 | 9..843 | 4131 | 99.7 | Plus |
| CG9195-PB | 339 | Scamp-RB | 1..291 | 9..299 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scamp-RC | 2322 | CG9195-RC | 116..951 | 8..843 | 4154 | 99.8 | Plus |
| Scamp-RA | 2391 | CG9195-RA | 116..951 | 8..843 | 4154 | 99.8 | Plus |
| Scamp-RD | 2813 | CG9195-RD | 830..1373 | 300..843 | 2694 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15449281..15449509 | 299..71 | 1145 | 100 | Minus |
| X | 23542271 | X | 15447619..15447831 | 843..631 | 1039 | 99.1 | Minus |
| X | 23542271 | X | 15448379..15448583 | 501..297 | 1025 | 100 | Minus |
| X | 23542271 | X | 15447893..15448024 | 633..502 | 660 | 100 | Minus |
| X | 23542271 | X | 15449704..15449768 | 72..8 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:53:25 has no hits.
MXO52726.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:06 Download gff for
MXO52726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9195-PA | 1..835 | 9..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:03 Download gff for
MXO52726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scamp-RA | 110..951 | 1..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:14 Download gff for
MXO52726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scamp-RA | 110..951 | 1..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:14 Download gff for
MXO52726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15447619..15447830 | 632..843 | 99 | <- | Minus |
| X | 15447895..15448024 | 502..631 | 100 | <- | Minus |
| X | 15448379..15448580 | 300..501 | 100 | <- | Minus |
| X | 15449281..15449508 | 72..299 | 100 | <- | Minus |
| X | 15449705..15449773 | 1..71 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:03 Download gff for
MXO52726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15342412..15342613 | 300..501 | 100 | <- | Minus |
| arm_X | 15343314..15343541 | 72..299 | 100 | <- | Minus |
| arm_X | 15343738..15343806 | 1..71 | 94 | | Minus |
| arm_X | 15341652..15341863 | 632..843 | 99 | <- | Minus |
| arm_X | 15341928..15342057 | 502..631 | 100 | <- | Minus |
