MXO52727.5prime Sequence
375 bp (375 high quality bases) assembled on 2007-04-02
> MXO52727.5prime
CAGTCGACATGATAGCAATGGACGAGCAGCGCGGCGACAAGATCTACGGC
GGATGCGAGGGTCCGGACGCCATGTACGTGAAGCTGATTTCCTCGGACGG
CCACGAATTTGTCGTCAAACGCGAGCACGCTCTCACCTCCGGCACAATCC
GGGCGATGTTGTCCGGACCGGGTCAGTTTGCCGAGAACGAGGCCAACGAG
GTGCATTTCCGGGAGATACCATCCCACGTCCTACAAAAGGTCTGCATGTA
CTTCACCTATAAAGTGCGTTACACCAACAGTTCTACCGAAATACCCGAAT
TCCCGATCGCTCCGGAGATCGCATTAGAACTTTTGATGGCGGCTAATTTC
CTAGACTGCGCAAGCTTTCTAGACC
MXO52727.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9291-PA | 354 | Elongin-C-RA | 1..351 | 9..359 | 1755 | 100 | Plus |
| CG9291-PB | 354 | Elongin-C-RB | 1..351 | 9..359 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EloC-RB | 654 | CG9291-RB | 148..498 | 9..359 | 1755 | 100 | Plus |
| EloC-RA | 576 | CG9291-RA | 70..420 | 9..359 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19445928..19446139 | 220..9 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 19445241..19445379 | 359..221 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:52 has no hits.
MXO52727.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:07 Download gff for
MXO52727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9291-PB | 1..354 | 9..363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:19 Download gff for
MXO52727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elongin-C-RA | 70..425 | 9..364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:54 Download gff for
MXO52727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloC-RA | 70..425 | 9..364 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:54 Download gff for
MXO52727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19445236..19445379 | 221..364 | 98 | <- | Minus |
| 2R | 19445928..19446144 | 1..220 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:19 Download gff for
MXO52727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15332741..15332884 | 221..364 | 98 | <- | Minus |
| arm_2R | 15333433..15333649 | 1..220 | 98 | | Minus |
