MXO52728.5prime Sequence
553 bp (553 high quality bases) assembled on 2007-04-02
> MXO52728.5prime
CCCCCTAAAGCGAAGTTATCAGTCGACATGGGAAATGAAACATCCCTGCA
GGGGGAAATGTGTTCCAATTTCGACGCCGACGAGATCCGGCGGCTGGGCA
AACGTTTCCGGAAACTGGACCTGGACAATTCGGGCGCGCTGAGCGTGGAC
GAGTTCATGTCGCTGCCGGAGCTGCAACAGAATCCGCTGGTGCAGCGCGT
GATCGACATTTTCGACGCGGACGGCAACGGCGAGGTGGACTTCAAGGAGT
TCATCCAGGGCGTGTCGCAGTTCAGCGTCAAGGGCGACAAGCTGTCCAAG
TTGCGCTTCGCCTTTCGCATCTATGACATGGACAACGATGGTTACATTTC
CAATGGCGAACTGTTTCAGGTTTTAAAGATGATGGTAGGCAATATTCTGT
CCGCCCCCCAACTGCAGCAGATTGTGGACAAGACGATCGGATTCGCGGAT
AAGGATGAGGATGGCAAGATCTCGTTCGATGAGTTCTGCTCTGTGGTCGG
CAACACGGACATTCACAAGAAGATGGTAGTCGATGTCGCAAGCTTTCTAG
ACC
MXO52728.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11217-PA | 513 | CanB2-RA | 27..367 | 54..394 | 1705 | 100 | Plus |
| CG11217-PA | 513 | CanB2-RA | 382..510 | 409..537 | 645 | 100 | Plus |
| CG4209-PA | 513 | CanB-RA | 31..251 | 58..278 | 380 | 86.8 | Plus |
| CG4209-PA | 513 | CanB-RA | 418..509 | 445..536 | 185 | 88 | Plus |
| CG4209-PA | 513 | CanB-RA | 256..320 | 283..347 | 150 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanB2-RB | 2061 | CG11217-RB | 257..766 | 28..537 | 2370 | 97.6 | Plus |
| CanB2-RA | 1143 | CG11217-RA | 257..766 | 28..537 | 2370 | 97.6 | Plus |
| CanB-RB | 1148 | CG4209-RB | 103..612 | 27..536 | 1275 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7787234..7787533 | 71..370 | 1500 | 100 | Plus |
| X | 23542271 | X | 5333404..5333913 | 27..536 | 1275 | 83.3 | Plus |
| 2R | 25286936 | 2R | 7787589..7787758 | 368..537 | 745 | 95.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:24 has no hits.
MXO52728.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:07 Download gff for
MXO52728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11217-PA | 1..513 | 28..541 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:18 Download gff for
MXO52728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanB2-RA | 257..769 | 28..541 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:11 Download gff for
MXO52728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanB2-RA | 257..769 | 28..541 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:11 Download gff for
MXO52728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7787234..7787532 | 71..369 | 100 | -> | Plus |
| 2R | 7787591..7787761 | 370..541 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:18 Download gff for
MXO52728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3674739..3675037 | 71..369 | 100 | -> | Plus |
| arm_2R | 3675096..3675266 | 370..541 | 94 | | Plus |
