MXO52729.5prime Sequence
420 bp (373 high quality bases) assembled on 2007-04-02
> MXO52729.5prime
CAGTCGACATGGAGAACAACGAACCCCCCTCCCCCTCGGGATCCAACAAC
AACGATTTTCCCATACTTCCGCCACCGCCGAACGCGAATGACAACTACCC
CCAATTCGGTGACCATCAAATCAGGAACAACAATGCAGCCCAGAAGAAGC
TGCAGCAGACCCAAGCCAAGGTGGACGAGGTGGTCGGGATTATGCGTGTG
AACGTGGAGAAGGTCCTGGAGCGGGACCAGAAGCTATCGGAACTGGGCGA
GCGTGCGGATCAGCTGGAGCAGGGAGCATCCCAGTTCGAGCAGCAGGCCG
GCAAGCTGAAGCGCAAGCAATGGTGGGCCAACATGAAGATGATGATCATT
CTGGGCGTGATAGCCGTTGTGCTGTTCTTTTTCCCCCCCCCGTCGCTTTT
CAATGCTAGCTTAAAAAAAC
MXO52729.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12210-PB | 399 | Syb-RB | 94..366 | 102..374 | 1365 | 100 | Plus |
| CG12210-PA | 390 | Syb-RA | 48..297 | 125..374 | 1250 | 100 | Plus |
| CG12210-PB | 399 | Syb-RB | 1..90 | 9..98 | 425 | 98.8 | Plus |
| CG12210-PA | 390 | Syb-RA | 1..47 | 9..55 | 210 | 97.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syb-RC | 921 | CG12210-RC | 147..512 | 9..374 | 1770 | 98.9 | Plus |
| Syb-RB | 1139 | CG12210-RB | 147..512 | 9..374 | 1770 | 98.9 | Plus |
| Syb-RE | 814 | CG12210-RE | 156..405 | 125..374 | 1250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10250895..10251213 | 374..56 | 1550 | 99.1 | Minus |
| 3L | 28110227 | 3L | 1635328..1635439 | 311..200 | 245 | 81.2 | Minus |
| 2R | 25286936 | 2R | 10251928..10251974 | 55..9 | 220 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:32:28 has no hits.
MXO52729.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:07 Download gff for
MXO52729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12210-PB | 1..399 | 9..406 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:51 Download gff for
MXO52729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syb-RB | 139..547 | 1..408 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:57 Download gff for
MXO52729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syb-RB | 139..547 | 1..408 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:57 Download gff for
MXO52729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10250895..10251213 | 56..374 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:51 Download gff for
MXO52729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6138400..6138718 | 56..374 | 99 | <- | Minus |
