Clone MXO52739 Report

Search the DGRC for MXO52739

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:527
Well:39
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptisopeptidase-T-3-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO52739.5prime Sequence

719 bp (717 high quality bases) assembled on 2007-04-02

> MXO52739.5prime
CAGTCGACATGCAAAAACTGCGCACTTTGTTTCTCAGGAAATCAGCCCAT
ACAAATCGCCCAGGTAGCTCTACTTCTGGCGAGGCAGACGATGCCAGCAG
GCCAGGTGAATCTATCCTGGTGCGGGTAATCTGCCCCAGCTCTCGGGTTC
TTATCTTCAAAACGGACGTTAATAAGCGCCTAAACGAGCTGAAGAGTGAG
GTGATTCTGGAACTGAGCGACGATCCCGACTCCATCCAGCTATTTGCCCC
AGATGTGCGGCATCTTAATCCGCGATACCGTCTCTATCGGGCGGAATACT
TCGGCGGCGAGCTTAACGAGGGCGACACGCTGGCCCAGCTAAAAGTTCGC
AACAATGAGACTTTTATACTCTCTCCACGACGCAATACTCTGCCGCAGAC
TGTTTCACGGATACGTGAGGTTCCTGGCCCAAATGAGCAGCTGGTGGAGA
GCGCCACCCGATACGTGCCCGTCAATTGCAACCAGCTGCCCACCATCGAT
ATTAATGAAATCTTTCAGCAGTCGAATATCCAATACGATGTGCGAAAGGT
GTTGATCTCTTTGGCTCAAGCTTCTGCGGCGGTTATAGGAGCTGGCCCTT
ATGCTCCACGCCTGATAGCTATGCTAAAGCAACGTTTGATCAATCGCCGA
AATCAGCAAGCGGATACGCTGCAATGCCTCGTGGACATGGGCTTCAAGCG
GGAGCTAGCCGCATTTGCC

MXO52739.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11025-PB 1308 isopeptidase-T-3-RB 1..711 9..719 3480 99.5 Plus
CG11025-PA 1674 isopeptidase-T-3-RA 396..1077 38..719 3360 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
isopeptidase-T-3-RB 1778 CG11025-RB 105..815 9..719 3510 99.6 Plus
isopeptidase-T-3-RC 2491 CG11025-RC 532..1226 25..719 3445 99.7 Plus
isopeptidase-T-3-RA 2479 CG11025-RA 533..1214 38..719 3380 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19671359..19671850 36..527 2430 99.6 Plus
2R 25286936 2R 19671906..19672097 528..719 960 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:06:35 has no hits.

MXO52739.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:10 Download gff for MXO52739.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11025-PB 1..711 9..719 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:22 Download gff for MXO52739.5prime
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RB 105..815 9..719 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:57 Download gff for MXO52739.5prime
Subject Subject Range Query Range Percent Splice Strand
isopeptidase-T-3-RB 105..815 9..719 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:57 Download gff for MXO52739.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19671267..19671295 9..37 96 -> Plus
2R 19671361..19671850 38..527 99 -> Plus
2R 19671906..19672097 528..719 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:22 Download gff for MXO52739.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15558772..15558800 9..37 96 -> Plus
arm_2R 15558866..15559355 38..527 99 -> Plus
arm_2R 15559411..15559602 528..719 100   Plus