Clone MXO52741 Report

Search the DGRC for MXO52741

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:527
Well:41
Vector:pMK33-CTAP-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO52741.5prime Sequence

588 bp (549 high quality bases) assembled on 2007-04-02

> MXO52741.5prime
CAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGGCCTCGCAG
TTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCAAAGGCGCT
GGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGCCGTGGTGC
TGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAGACGCCGGC
GGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTGGCCGGCTT
GGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGAGGCAGCCA
ACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACCTGTGCCAC
CGAGTCGCCGGCTACGTTCACGCCTATTTTCCCCCCCCGCCGTCCGCCCC
TTCGGACTTTCAAAAATTCTCGCCTCCTTCGGTTACTTCGCCTGCGCCAG
CGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAGAAGCTCAAGATGG
ATATGAGGACCGACGAATTGCTGGAGAGCGCTGGTGAAATCATCTACAAA
GTCCATGACGAGTTGAAAGACAAGGACTTCCGCTTCGA

MXO52741.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1519-PB 708 Prosalpha7-RB 1..368 9..376 1815 99.7 Plus
CG1519-PA 762 Prosalpha7-RA 1..368 9..376 1815 99.7 Plus
CG1519-PB 708 Prosalpha7-RB 409..581 416..588 815 98.8 Plus
CG1519-PA 762 Prosalpha7-RA 470..635 423..588 780 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha7-RA 976 CG1519-RA 120..540 9..428 1885 96.7 Plus
Prosalpha7-RA 976 CG1519-RA 589..754 423..588 800 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9847239..9847638 428..30 1755 96.5 Minus
2R 25286936 2R 9847073..9847190 540..423 575 99.2 Minus
2R 25286936 2R 9846858..9846905 588..541 225 97.9 Minus
Blast to na_te.dros performed 2014-11-28 20:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 1817..1864 463..512 136 80 Plus

MXO52741.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:11 Download gff for MXO52741.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1519-PA 1..419 9..426 96 <- Plus
CG1519-PA 474..634 427..587 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:19 Download gff for MXO52741.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 113..538 1..426 95 <- Plus
Prosalpha7-RA 593..753 427..587 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:00 Download gff for MXO52741.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 113..538 1..426 95 <- Plus
Prosalpha7-RA 593..753 427..587 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:00 Download gff for MXO52741.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9846859..9846905 541..587 97 <- Minus
2R 9847073..9847193 422..540 97 <- Minus
2R 9847246..9847638 30..421 96 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:19 Download gff for MXO52741.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5734364..5734410 541..587 97 <- Minus
arm_2R 5734578..5734698 422..540 97 <- Minus
arm_2R 5734751..5735143 30..421 96 <- Minus