MXO52741.5prime Sequence
588 bp (549 high quality bases) assembled on 2007-04-02
> MXO52741.5prime
CAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGGCCTCGCAG
TTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCAAAGGCGCT
GGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGCCGTGGTGC
TGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAGACGCCGGC
GGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTGGCCGGCTT
GGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGAGGCAGCCA
ACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACCTGTGCCAC
CGAGTCGCCGGCTACGTTCACGCCTATTTTCCCCCCCCGCCGTCCGCCCC
TTCGGACTTTCAAAAATTCTCGCCTCCTTCGGTTACTTCGCCTGCGCCAG
CGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAGAAGCTCAAGATGG
ATATGAGGACCGACGAATTGCTGGAGAGCGCTGGTGAAATCATCTACAAA
GTCCATGACGAGTTGAAAGACAAGGACTTCCGCTTCGA
MXO52741.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1519-PB | 708 | Prosalpha7-RB | 1..368 | 9..376 | 1815 | 99.7 | Plus |
CG1519-PA | 762 | Prosalpha7-RA | 1..368 | 9..376 | 1815 | 99.7 | Plus |
CG1519-PB | 708 | Prosalpha7-RB | 409..581 | 416..588 | 815 | 98.8 | Plus |
CG1519-PA | 762 | Prosalpha7-RA | 470..635 | 423..588 | 780 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-RA | 976 | CG1519-RA | 120..540 | 9..428 | 1885 | 96.7 | Plus |
Prosalpha7-RA | 976 | CG1519-RA | 589..754 | 423..588 | 800 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9847239..9847638 | 428..30 | 1755 | 96.5 | Minus |
2R | 25286936 | 2R | 9847073..9847190 | 540..423 | 575 | 99.2 | Minus |
2R | 25286936 | 2R | 9846858..9846905 | 588..541 | 225 | 97.9 | Minus |
Blast to na_te.dros performed 2014-11-28 20:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1817..1864 | 463..512 | 136 | 80 | Plus |
MXO52741.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:11 Download gff for
MXO52741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1519-PA | 1..419 | 9..426 | 96 | <- | Plus |
CG1519-PA | 474..634 | 427..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:19 Download gff for
MXO52741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 113..538 | 1..426 | 95 | <- | Plus |
Prosalpha7-RA | 593..753 | 427..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:00 Download gff for
MXO52741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 113..538 | 1..426 | 95 | <- | Plus |
Prosalpha7-RA | 593..753 | 427..587 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:00 Download gff for
MXO52741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9846859..9846905 | 541..587 | 97 | <- | Minus |
2R | 9847073..9847193 | 422..540 | 97 | <- | Minus |
2R | 9847246..9847638 | 30..421 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:19 Download gff for
MXO52741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5734364..5734410 | 541..587 | 97 | <- | Minus |
arm_2R | 5734578..5734698 | 422..540 | 97 | <- | Minus |
arm_2R | 5734751..5735143 | 30..421 | 96 | <- | Minus |