MXO52743.5prime Sequence
871 bp (750 high quality bases) assembled on 2007-04-02
> MXO52743.5prime
CAGTCGACATGAGTGATACGCGTGAGCAGATTCTGGAGCAAATCAAAGTG
CAAGGCGATCTCGTCCGTCAATTGAAAGCAGCGAAGGAGTCGAAGGAGAA
GATCGATGAGGAGGTCGCCCGCCTACTGGCCCTAAAGGCCACTCTTGGCG
GAGATGCCGCCCCCACCAATCAGAAGTTCACGCTAAAGACGCCCAAAGGC
ACACGGGACTATGGTCCTCAGCAGATGACCCTGCGCCAGGGCGTCCTGGA
CAAGATCGTCCAGGTGTTCAAGCGCCACGGCGGCGAAGCCATCGATACGC
CCGTGTTCGAGCTGAAGGAAGTGCTGACGGGCAAGTACGGCGAGGACTCA
AAGCTGATCTACGACTTGAAGGATCAGGGCGGTGAGATCCTATCGATGAG
GTATGACTTGACCGTGCCGCTGGCTCGTTACCTGGCGATGAACAAGATCT
CGAGCATCAAGCGCTACCACATCGCCAAGGTCTATCGACGCGACAATCCG
GCAATGACCAAGGGTCGCTATCGGGAGTTCTACCAATGTGACTTCGACAT
CGCCGGCACCTACGATCCCATGCTGCCGGATGCCGAGTGCGTCAAGATTG
TGTCGGAGATACTGGACACGCTGGACATTGGAGACTATGTGATAAAGCTA
AATCACCGCCAGCTTTTGGACGGCATGTTCCAGGCGTGCGGAGTGCCGGC
GGATAGCTTCCGCACCATCTGCTCAGCGGTGGATAAGTTGGATAAGTCGC
CCTGGGCGGATGTGCGCAAGGAGATGGTGGATGAGAAGGGTCTGGACGAG
GCAGCAGCGGATCGAATTGGCGAGTACGTGCGACTGAGCGGCGGTGCCGA
GCTGGTGGAACAACTGCTGGC
MXO52743.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6335-PA | 1569 | Aats-his-RA | 1..863 | 9..871 | 4315 | 100 | Plus |
| CG6335-PB | 1692 | Aats-his-RB | 433..986 | 318..871 | 2770 | 100 | Plus |
| CG6335-PB | 1692 | Aats-his-RB | 158..376 | 100..318 | 1095 | 100 | Plus |
| CG6335-PB | 1692 | Aats-his-RB | 1..93 | 9..101 | 465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-his-RA | 1978 | CG6335-RA | 163..1025 | 9..871 | 4315 | 100 | Plus |
| Aats-his-RE | 2862 | CG6335-RE | 1138..1909 | 100..871 | 3860 | 100 | Plus |
| Aats-his-RD | 2104 | CG6335-RD | 380..1151 | 100..871 | 3860 | 100 | Plus |
| Aats-his-RE | 2862 | CG6335-RE | 163..255 | 9..101 | 465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18518823..18519253 | 316..746 | 2155 | 100 | Plus |
| X | 23542271 | X | 18517809..18518027 | 100..318 | 1095 | 100 | Plus |
| X | 23542271 | X | 18519313..18519439 | 745..871 | 635 | 100 | Plus |
| X | 23542271 | X | 18515590..18515682 | 9..101 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:29:57 has no hits.
MXO52743.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:11 Download gff for
MXO52743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6335-PA | 1..863 | 9..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:34 Download gff for
MXO52743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-his-RA | 163..1025 | 9..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:30 Download gff for
MXO52743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-his-RA | 163..1025 | 9..871 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:30 Download gff for
MXO52743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18515590..18515682 | 9..101 | 100 | -> | Plus |
| X | 18517811..18518026 | 102..317 | 100 | -> | Plus |
| X | 18518825..18519253 | 318..746 | 100 | -> | Plus |
| X | 18519315..18519439 | 747..871 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:34 Download gff for
MXO52743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18409623..18409715 | 9..101 | 100 | -> | Plus |
| arm_X | 18411844..18412059 | 102..317 | 100 | -> | Plus |
| arm_X | 18412858..18413286 | 318..746 | 100 | -> | Plus |
| arm_X | 18413348..18413472 | 747..871 | 100 | | Plus |
