MXO52744.5prime Sequence
704 bp (554 high quality bases) assembled on 2007-04-02
> MXO52744.5prime
CAGTCGACATGGATGTGGATAATGGCGAGGGGCAGGTGCAGGTGCACCTG
AAGACCAAGCAGGAGCATTATGCCGTGCCTGATGTGCCGTACGCCATCGA
TGGCACCGTCACCACCGTGGAACTAAACACATTCGTGAACGCACTGTTGC
GTCAAAAAGATGGCTCTTCCGACACTGACTTCGACTTCCTGGTGTTCGAT
GAGTACCTGCGCGGCCGGCTGTGCGATCACCTGCGCGAGAAAGCCATCAG
TTTCGAGGACGCCATCGAGATCGAGTATGTGGAGCGGTTCCCGGCGCCAG
AGCCACAGGATTGCCTGCTGCACGACGACTGGGTGTCCGCGGTGAAGGCT
AGAGGAAAGTGGATCCTCTCTGGGTGCTACGACAACACCCTGAATTTGTG
GACCAACAAGGGCAAGCACATTCTCACTATTTCTGGTCACACGGCGCCCA
TCAAGGCGGTGGACTGGATATCGCTGGACGAGGAGACGGGACGTTTTGTG
TCCACATCGCAGGATCAGACCGCCATGCTGTGGCAGTGGAACGTGGGCTC
CAACTCGGGTGGAATGTGTCTCCGTGTGCAAGGGCCCACGAAGCGAGGCG
TCGACAGTGTCAGCGTGAGTCCGGATGGTCTGAGATTTGCCACGGGCTCT
TGGGACACGATGTTGAAGGTGTGGTCAGCAGAGCTGGACGATGCAGTCGA
GGGC
MXO52744.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6724-PA | 1263 | CG6724-RA | 1..550 | 9..558 | 2525 | 98.3 | Plus |
| CG6724-PA | 1263 | CG6724-RA | 581..693 | 592..704 | 565 | 100 | Plus |
| CG6724-PA | 1263 | CG6724-RA | 549..577 | 558..586 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6724-RB | 1529 | CG6724-RB | 220..912 | 9..704 | 3270 | 98.3 | Plus |
| CG6724-RA | 1535 | CG6724-RA | 220..912 | 9..704 | 3270 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10768981..10769613 | 704..69 | 2925 | 98.4 | Minus |
| 2L | 23513712 | 2L | 10769675..10769733 | 67..9 | 280 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:03:45 has no hits.
MXO52744.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:12 Download gff for
MXO52744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6724-PA | 1..693 | 9..704 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:46 Download gff for
MXO52744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6724-RA | 214..912 | 1..704 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:11 Download gff for
MXO52744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6724-RA | 214..912 | 1..704 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:11 Download gff for
MXO52744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10768981..10769614 | 68..704 | 98 | <- | Minus |
| 2L | 10769675..10769739 | 1..67 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:46 Download gff for
MXO52744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10768981..10769614 | 68..704 | 98 | <- | Minus |
| arm_2L | 10769675..10769739 | 1..67 | 94 | | Minus |
