MXO52752.5prime Sequence
896 bp (786 high quality bases) assembled on 2007-04-02
> MXO52752.5prime
CAGTCGACATGTCAGATTCGACTACTTTCCGTTTTAACTCATCCATTCTT
GATCAGTCAGCGGACAGCAACGTATCCAGTTCGAGCTCCAATTCCAGTGT
ATCCGACTCTTCTGTGGACTCCCATTCATCCATAGAATCCAATTCGGGAC
ACAATACATCCGTGGAATCTCAGTCATCCGCGGAATCTGATTCATCCGCT
GATTCCCATTCGTCCTTGGAACGCCCATCCCCAGTGGAGCGTGATTTATC
TGTGGAATCAGACTCATCTTCAGCCACCAATACCAGCGAATCTTCAGTCG
GAGAAGCTTCAAACCAACTGCAGTCACCGCAAAGCAATAACCCCTTAAAT
ATGGCTAACTTGTCTGTCTCGACTGAAGATGCTCATTCGCAGATCAGATC
ACTTACCCAGGATGTGATCCAGATGGAAGCAGAGTTGGATCGCATGAATC
GCTACTGCGAGGAAGTTGTGGCACAGATTGACACCTTCGCCACGAGAACC
TCAACGCCAACAACTCGTAGAATTCGCCGCAGAACGAGTCCAGTAGAAGT
GATAGATCTGTCCCATTTGGACCGTGCACCACCTGTTCGATCCGCTCGGA
ATCGTGATCCCGATGCTTTCATCGATCTATGCACCCCCGAAGGCCCAAGA
AGTCGCACAGTGAATCTTCACTCCAACGACTCCCTCACCATTCTGCCACG
TCGGTCAGCCGAAAATGACCCGGTAGTGGATCTCGACGTTGCGTCGCCAC
CAAAACGCGTTAATCGCGACATTGATGAGTCCCAAAAAGAGGAGTTATAC
AAGTGCCCCATCTGCATGGACAGTGTATCGAAGCGCGAGCCAGTGTCAAC
CAAATGTGGACACGTCTTCTGCCGCGAATGCATCGAAACAGCCATC
MXO52752.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10981-PA | 960 | CG10981-RA | 1..888 | 9..896 | 4415 | 99.8 | Plus |
| CG10981-PB | 939 | CG10981-RB | 28..867 | 57..896 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgrn-RA | 1632 | CG10981-RA | 335..1222 | 9..896 | 4425 | 99.9 | Plus |
| dgrn-RD | 1635 | CG10981-RD | 335..1225 | 9..896 | 4385 | 99.6 | Plus |
| dgrn-RB | 1611 | CG10981-RB | 362..1201 | 57..896 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5825036..5825444 | 36..444 | 2045 | 100 | Plus |
| 3R | 32079331 | 3R | 5825805..5826166 | 535..896 | 1810 | 100 | Plus |
| 3R | 32079331 | 3R | 5825499..5825588 | 445..534 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:57 has no hits.
MXO52752.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:14 Download gff for
MXO52752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10981-PA | 1..888 | 9..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:20 Download gff for
MXO52752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgrn-RA | 337..1232 | 1..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:59 Download gff for
MXO52752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgrn-RA | 327..1222 | 1..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:59 Download gff for
MXO52752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5825036..5825444 | 36..444 | 100 | -> | Plus |
| 3R | 5825499..5825588 | 445..534 | 100 | -> | Plus |
| 3R | 5825805..5826166 | 535..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:20 Download gff for
MXO52752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1650758..1651166 | 36..444 | 100 | -> | Plus |
| arm_3R | 1651221..1651310 | 445..534 | 100 | -> | Plus |
| arm_3R | 1651527..1651888 | 535..896 | 100 | | Plus |
