MXO52753.5prime Sequence
940 bp (793 high quality bases) assembled on 2007-04-02
> MXO52753.5prime
CAGTCGACATGAATCTGCGGGGAACCCCTCCCAAGAAGGAGGGCAAAATG
CGCATTCGGGCCTTTCCGGCCTCCATGGACGAGAAGTACGTGGAGACCAT
TTGGGCCAGCTTAAAGAATGCTATCCAGGAGATACAGAAAAAGAACAACT
CCGGACTATCGTTTGAACAACTCTACCGGAATGCGTACAACATGGTGCTG
CATAAGCACGGCAATAGACTGTATTACGGTCTGAGGGAGGTCGTCTCAGA
ACACCTGGAGCACAAGGTGCGGGCGGATGTGCTGGAGGCTCTGCACAGCA
ATTTCCTACCCAAGTTAAACCAGGCCTGGACAGACCACCAGACATCTATG
GTGATGATCCGCGACATACTCATGTACATGGATAGAGTTTATGTGCAGCA
GCGCGAGGTAGACAATGTGTACAATTTGGGATTAATTTTGTTCAGGGATC
AGGTGGTTCGCTATTCTGAGATTCAAAAGGCCCTGCGAGAGAAGTTGCTG
GGCATGGTGATGGAGGAACGTCATGGCGAAGCCATTAACCATCTGGCTAT
CAAGAATGCTTGCAGTATGCTGATCACCCTGGGGATTAACTCGCGCACTG
TCTACGAAGAGGACTTTGAAAAGCCCTTCCTTGCGCAATCGGCGGCGTTT
TACAAATTCGAGTCGCAGAACTTTCTTGCCGAGAACAACGCTGGCGTTTA
CATCAAGAAAGTGGAAGCGCGCATCACGGAGGAATCTTCCCGGGCAGCGC
TGTATCTCGATAAGGATACGGAGCCCCGCATTGTGCGCGTGGTCGAAGAA
GAGCTGATCAAAAAGCACATGCGACCCATTGTTGAAATGGAGAACTCGGG
CGTGGTGTACATGATCAAGAACTCAAAGACCGAGGATCTGGCCTGCACAT
ATAACCTTTTCTCGCGCCTGAAGGAGGAGGGTCTCAGGGT
MXO52753.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11861-PC | 2322 | gft-RC | 1..928 | 9..936 | 4565 | 99.6 | Plus |
| CG11861-PA | 2322 | gft-RA | 1..928 | 9..936 | 4565 | 99.6 | Plus |
| CG11861-PB | 2322 | gft-RB | 1..928 | 9..936 | 4565 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul3-RE | 3272 | CG11861-RB | 605..1537 | 8..940 | 4605 | 99.6 | Plus |
| Cul3-RC | 3037 | CG11861-RA | 370..1302 | 8..940 | 4605 | 99.6 | Plus |
| Cul3-RD | 4332 | CG11861-RC | 881..1813 | 8..940 | 4605 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15268270..15268760 | 940..450 | 2425 | 99.6 | Minus |
| 2L | 23513712 | 2L | 15268819..15269205 | 454..68 | 1935 | 100 | Minus |
| 2L | 23513712 | 2L | 15270904..15270965 | 69..8 | 280 | 96.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:03:58 has no hits.
MXO52753.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:14 Download gff for
MXO52753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11861-PB | 1..932 | 9..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:56 Download gff for
MXO52753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul-3-RD | 876..1813 | 1..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:19 Download gff for
MXO52753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul3-RD | 876..1813 | 1..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:19 Download gff for
MXO52753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15270905..15270970 | 1..68 | 91 | | Minus |
| 2L | 15268270..15268757 | 453..940 | 99 | <- | Minus |
| 2L | 15268821..15269204 | 69..452 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:56 Download gff for
MXO52753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15268270..15268757 | 453..940 | 99 | <- | Minus |
| arm_2L | 15268821..15269204 | 69..452 | 100 | <- | Minus |
| arm_2L | 15270905..15270970 | 1..68 | 91 | | Minus |
