MXO52754.5prime Sequence
811 bp (714 high quality bases) assembled on 2007-04-02
> MXO52754.5prime
CAGTCGACATGAAAATGGTGTTGTCGCAGCGGCAGCGCGAGGAGCTTAAC
CAAGCGATTGCCGATTATCTGGGCTCAAATGGCTACGCCGACTCATTGGA
GACCTTCCGCAAGGAGGCCGATCTCAGCACAGAAGTGGAAAAGAAATTTG
GCGGACTGTTGGAAAAGAAGTGGACGTCCGTGATTCGGCTGCAGAAGAAA
GTGATGGAACTAGAGGCTAAGCTCACTGAAGCTGAGAAGGAGGTCATCGA
GGGGGCGCCCACAAAGAACAAACGGACGCCTGGCGAGTGGATACCTCGGC
CGCCAGAGAAGTTCTCCCTGACCGGTCATCGTGCCAGCATAACGAGGGTA
ATTTTCCACCCCATCTTTGCTCTTATGGTTTCCGCATCCGAAGACGCCAC
CATTAGGATTTGGGACTTCGAAACTGGCGAGTACGAACGCAGCCTGAAGG
GACACACGGACTCTGTGCAGGATGTCGCATTTGATGCCCAGGGCAAGCTT
TTGGCCTCCTGCAGCGCGGACTTATCCATCAAATTGTGGGATTTCCAGCA
GAGCTACGAGTGTATCAAAACTATGCATGGTCACGATCACAATGTCTCGT
CGGTGGCCTTTGTGCCGGCCGGAGATTATGTACTCTCTGCATCCCGGGAC
CGCACTATTAAAATGTGGGAGGTGGCCACAGGCTACTGTGTGAAAACCTA
CACAGGCCATCGAGAGTGGGTGCGAATGGTGCGAGTGCACATCGAANGCA
GCATCTTTGCCACATGCTCAAATGATCAGACAATACGTGTTTGGTTGACG
AATTCAAAGAC
MXO52754.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8440-PA | 1236 | Lis-1-RA | 1..800 | 9..808 | 3981 | 99.8 | Plus |
CG8440-PC | 1236 | Lis-1-RC | 1..800 | 9..808 | 3981 | 99.8 | Plus |
CG8440-PD | 1236 | Lis-1-RD | 1..800 | 9..808 | 3981 | 99.8 | Plus |
CG8440-PE | 1236 | Lis-1-RE | 1..800 | 9..808 | 3981 | 99.8 | Plus |
CG8440-PB | 1236 | Lis-1-RB | 1..800 | 9..808 | 3981 | 99.8 | Plus |
CG8440-PF | 1236 | Lis-1-RF | 1..800 | 9..808 | 3981 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lis-1-RG | 1675 | CG8440-RG | 125..924 | 9..808 | 3989 | 99.9 | Plus |
Lis-1-RF | 3292 | CG8440-RF | 630..1429 | 9..808 | 3989 | 99.9 | Plus |
Lis-1-RB | 2775 | CG8440-RB | 113..912 | 9..808 | 3989 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16182158..16182462 | 47..351 | 1525 | 100 | Plus |
2R | 25286936 | 2R | 16182736..16182914 | 504..682 | 895 | 100 | Plus |
2R | 25286936 | 2R | 16182516..16182673 | 347..504 | 790 | 100 | Plus |
2R | 25286936 | 2R | 16182982..16183108 | 682..808 | 624 | 99.2 | Plus |
2R | 25286936 | 2R | 16182053..16182090 | 9..46 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:39:46 has no hits.
MXO52754.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:15 Download gff for
MXO52754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8440-PF | 1..804 | 9..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:09 Download gff for
MXO52754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lis-1-RB | 109..916 | 1..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:07 Download gff for
MXO52754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lis-1-RB | 109..916 | 1..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:07 Download gff for
MXO52754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16182049..16182090 | 1..46 | 91 | -> | Plus |
2R | 16182158..16182458 | 47..347 | 100 | -> | Plus |
2R | 16182517..16182673 | 348..504 | 100 | -> | Plus |
2R | 16182737..16182914 | 505..682 | 100 | -> | Plus |
2R | 16182983..16183112 | 683..811 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:09 Download gff for
MXO52754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12069554..12069595 | 1..46 | 91 | -> | Plus |
arm_2R | 12069663..12069963 | 47..347 | 100 | -> | Plus |
arm_2R | 12070022..12070178 | 348..504 | 100 | -> | Plus |
arm_2R | 12070242..12070419 | 505..682 | 100 | -> | Plus |
arm_2R | 12070488..12070617 | 683..811 | 98 | | Plus |