Clone MXO52754 Report

Search the DGRC for MXO52754

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:527
Well:54
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptLis-1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO52754.5prime Sequence

811 bp (714 high quality bases) assembled on 2007-04-02

> MXO52754.5prime
CAGTCGACATGAAAATGGTGTTGTCGCAGCGGCAGCGCGAGGAGCTTAAC
CAAGCGATTGCCGATTATCTGGGCTCAAATGGCTACGCCGACTCATTGGA
GACCTTCCGCAAGGAGGCCGATCTCAGCACAGAAGTGGAAAAGAAATTTG
GCGGACTGTTGGAAAAGAAGTGGACGTCCGTGATTCGGCTGCAGAAGAAA
GTGATGGAACTAGAGGCTAAGCTCACTGAAGCTGAGAAGGAGGTCATCGA
GGGGGCGCCCACAAAGAACAAACGGACGCCTGGCGAGTGGATACCTCGGC
CGCCAGAGAAGTTCTCCCTGACCGGTCATCGTGCCAGCATAACGAGGGTA
ATTTTCCACCCCATCTTTGCTCTTATGGTTTCCGCATCCGAAGACGCCAC
CATTAGGATTTGGGACTTCGAAACTGGCGAGTACGAACGCAGCCTGAAGG
GACACACGGACTCTGTGCAGGATGTCGCATTTGATGCCCAGGGCAAGCTT
TTGGCCTCCTGCAGCGCGGACTTATCCATCAAATTGTGGGATTTCCAGCA
GAGCTACGAGTGTATCAAAACTATGCATGGTCACGATCACAATGTCTCGT
CGGTGGCCTTTGTGCCGGCCGGAGATTATGTACTCTCTGCATCCCGGGAC
CGCACTATTAAAATGTGGGAGGTGGCCACAGGCTACTGTGTGAAAACCTA
CACAGGCCATCGAGAGTGGGTGCGAATGGTGCGAGTGCACATCGAANGCA
GCATCTTTGCCACATGCTCAAATGATCAGACAATACGTGTTTGGTTGACG
AATTCAAAGAC

MXO52754.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8440-PA 1236 Lis-1-RA 1..800 9..808 3981 99.8 Plus
CG8440-PC 1236 Lis-1-RC 1..800 9..808 3981 99.8 Plus
CG8440-PD 1236 Lis-1-RD 1..800 9..808 3981 99.8 Plus
CG8440-PE 1236 Lis-1-RE 1..800 9..808 3981 99.8 Plus
CG8440-PB 1236 Lis-1-RB 1..800 9..808 3981 99.8 Plus
CG8440-PF 1236 Lis-1-RF 1..800 9..808 3981 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
Lis-1-RG 1675 CG8440-RG 125..924 9..808 3989 99.9 Plus
Lis-1-RF 3292 CG8440-RF 630..1429 9..808 3989 99.9 Plus
Lis-1-RB 2775 CG8440-RB 113..912 9..808 3989 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16182158..16182462 47..351 1525 100 Plus
2R 25286936 2R 16182736..16182914 504..682 895 100 Plus
2R 25286936 2R 16182516..16182673 347..504 790 100 Plus
2R 25286936 2R 16182982..16183108 682..808 624 99.2 Plus
2R 25286936 2R 16182053..16182090 9..46 190 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:39:46 has no hits.

MXO52754.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:15 Download gff for MXO52754.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8440-PF 1..804 9..811 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:09 Download gff for MXO52754.5prime
Subject Subject Range Query Range Percent Splice Strand
Lis-1-RB 109..916 1..811 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:07 Download gff for MXO52754.5prime
Subject Subject Range Query Range Percent Splice Strand
Lis-1-RB 109..916 1..811 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:07 Download gff for MXO52754.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16182049..16182090 1..46 91 -> Plus
2R 16182158..16182458 47..347 100 -> Plus
2R 16182517..16182673 348..504 100 -> Plus
2R 16182737..16182914 505..682 100 -> Plus
2R 16182983..16183112 683..811 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:09 Download gff for MXO52754.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12069554..12069595 1..46 91 -> Plus
arm_2R 12069663..12069963 47..347 100 -> Plus
arm_2R 12070022..12070178 348..504 100 -> Plus
arm_2R 12070242..12070419 505..682 100 -> Plus
arm_2R 12070488..12070617 683..811 98   Plus