MXO52755.5prime Sequence
915 bp (810 high quality bases) assembled on 2007-04-02
> MXO52755.5prime
CAGTCGACATGCGAGCCTCCATTCCCCCCGGCATTCGAGTGGTGCGCGGA
CCCAACTGGATCTGGTCGAATCAAGACGACGGAGAAGGTCACGTTGGAAC
CGTTTGCGAAATCGGACGTTGCGGATCGACACATTCGCCAGAAAACACTG
TCGTGGTCAACTGGGATTCCGGACACCGGACCAACTACCGTGTGGGCTAC
CAAAACCAGTACGACTTGATAATTGTAGATAATGCTCAAGTTGGAGTTCG
TCACTCAAATGTTGTCTGCGATGGCTGTTCCAAGGCGGGTATCGCTGGCA
TAGTATTCAAGTGCGCCCAGTGTCCCAACTATCACCTATGCGCCTATTGC
TACGCAGAGGATCTGCACGATATTGAGCACCCGTTTATCCGCTACACGAC
TCCCAACTCGCTGGGCGTGAGATTGCCCATGAGAAAAGGTGCCAAGCGCA
TCCAGCTGCGAGGCATCTTTGTGGGTTCCAAAGTAGTGCGCGGTCCTGAC
TGGGAGTGGAACGAACAGGACGGCGGAGAAGGCAGGACGGGTCGGGTAAT
GGAAATCCGAGGCTGGGACAACGAATCGTGTCGCAGCGTGGCCAACGTAG
CGTGGGTAACCGGATCGACGAACGTCTACCGTCTAGGTCACAAGGGAAAC
GTTGACCTCAAGTACATTACTGCCACGTGCGGTGGTCACTACTATAAGGA
CCACATGCCTGTTCTAGGTCAGACAGAGGAGTTGCAGCCGGTGGCGCCCA
TGGTGAAGCCAAGCTTTTCCGTGGGCGACCGCGTCAAGGTTTGCCTAGAG
GTTGACGCCCTAATGAAATTGCAGCAGGGCCATGGCGGATGGAATCCGCG
CATGGTCGAGCATTTGTCCCAACTGGGCACAGTACACCGCATCACGGACA
AAGGGGAATATACGT
MXO52755.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17492-PA | 3150 | mib2-RA | 1..899 | 9..907 | 4420 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mib2-RC | 3805 | CG17492-RC | 236..1142 | 8..915 | 4470 | 99.6 | Plus |
| mib2-RB | 3899 | CG17492-RB | 398..1304 | 8..915 | 4470 | 99.6 | Plus |
| mib2-RA | 4164 | CG17492-RA | 595..1501 | 8..915 | 4470 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19038084..19038748 | 243..907 | 3295 | 99.7 | Plus |
| 2L | 23513712 | 2L | 19037802..19037972 | 74..244 | 855 | 100 | Plus |
| 2L | 23513712 | 2L | 19035798..19035865 | 8..75 | 325 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:39:49 has no hits.
MXO52755.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:15 Download gff for
MXO52755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17492-PA | 1..906 | 9..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:12 Download gff for
MXO52755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mib2-RA | 588..1501 | 1..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:09 Download gff for
MXO52755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mib2-RA | 588..1501 | 1..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:09 Download gff for
MXO52755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19035791..19035865 | 1..75 | 94 | -> | Plus |
| 2L | 19037804..19037971 | 76..243 | 100 | -> | Plus |
| 2L | 19038085..19038754 | 244..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:12 Download gff for
MXO52755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19035791..19035865 | 1..75 | 94 | -> | Plus |
| arm_2L | 19037804..19037971 | 76..243 | 100 | -> | Plus |
| arm_2L | 19038085..19038754 | 244..915 | 99 | | Plus |
